Abstract is missing.
- A*PA2: Up to 19× Faster Exact Global AlignmentRagnar Groot Koerkamp. [doi]
- Bioinformatics of Pathogens (Invited Talk)Tomás Vinar. [doi]
- Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and ImplementationMahmudur Rahman Hera, David Koslicki. [doi]
- A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder GraphsRocco Ascone, Giulia Bernardini 0001, Alessio Conte, Massimo Equi, Estéban Gabory, Roberto Grossi, Nadia Pisanti. [doi]
- The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene TreesAlitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond. [doi]
- An Efficient Algorithm for the Reconciliation of a Gene Network and Species TreeYao-ban Chan. [doi]
- The {mod-minimizer}: A Simple and Efficient Sampling Algorithm for Long k-MersRagnar Groot Koerkamp, Giulio Ermanno Pibiri. [doi]
- Applying the Safe-And-Complete Framework to Practical Genome AssemblySebastian S. Schmidt, Santeri Toivonen, Paul Medvedev, Alexandru I. Tomescu. [doi]
- On the Complexity of the Median and Closest Permutation ProblemsLuís Cunha, Ignasi Sau, Uéverton S. Souza. [doi]
- McDag: Indexing Maximal Common Subsequences in PracticeGiovanni Buzzega, Alessio Conte, Roberto Grossi, Giulia Punzi. [doi]
- Swiftly Identifying Strongly Unique k-MersJens Zentgraf, Sven Rahmann. [doi]
- AlfaPang: Alignment Free Algorithm for Pangenome Graph ConstructionAdam Cicherski, Anna Lisiecka, Norbert Dojer. [doi]
- RNA Triplet Repeats: Improved Algorithms for Structure Prediction and InteractionsKimon Boehmer, Sarah J. Berkemer, Sebastian Will, Yann Ponty. [doi]
- Front Matter, Table of Contents, Preface, Conference Organization [doi]
- RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base PairsThéo Boury, Laurent Bulteau, Yann Ponty. [doi]
- b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed IndexLore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, Jan Fostier. [doi]
- Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child OrientationTsuyoshi Urata, Manato Yokoyama, Momoko Hayamizu. [doi]
- Memoization on Shared Subtrees Accelerates Computations on Genealogical ForestsLukas Hübner, Alexandros Stamatakis. [doi]
- MEM-Based Pangenome Indexing for k-mer QueriesStephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead. [doi]
- Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone TreesYuanyuan Qi, Mohammed El-Kebir. [doi]
- Anchorage Accurately Assembles Anchor-Flanked Synthetic Long ReadsXiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao. [doi]
- Reconstructing Rearrangement Phylogenies of Natural GenomesLeonard Bohnenkämper, Jens Stoye, Daniel Dörr. [doi]
- Finding Maximum Common Contractions Between Phylogenetic NetworksBertrand Marchand, Nadia Tahiri, Olivier Tremblay Savard, Manuel Lafond. [doi]
- PLA-index: A k-mer Index Exploiting Rank Curve LinearityMd. Hasin Abrar, Paul Medvedev. [doi]