Table of Contents

• Image Analysis and Infrastructure Support for Data Mining the Farm Security Administration: Office of War Information Photography CollectionMarcus Slavenas, Paul Rodriguez, Alan B. Craig, Elizabeth Wuerffel, Jeffrey Will. 1 [doi]
• UrbanFlow: Large-scale Framework to Integrate Social Media and Authoritative Landuse MapsKiumars Soltani, Aiman Soliman, Anand Padmanabhan, Shaowen Wang. 2 [doi]
• Accelerating TauDEM for Extracting Hydrology Information from National-Scale High Resolution Topographic Dataset: Extended AbstractAhmet Artu Yildirim, David Tarboton, Yan Liu, Nazmus Shams Sazib, Shaowen Wang. 3 [doi]
• Time Propagation of Partial Differential Equations Using the Short Iterative Lanczos Method and Finite-Element Discrete Variable Representation: An Experiment Using the Intel Phi Coprocessors: Extended AbstractBarry I. Schneider, Klaus Bartschat, Xiaoxu Guan. 4 [doi]
• Optimization and parallel load balancing of the MPAS Atmosphere Weather and Climate CodeRobert S. Sinkovits, Michael G. Duda. 5 [doi]
• Optimization of non-linear image registration in AFNIJunqi Yin, Thomas Anthony, Jon Marstrander, Yuliang Liu, Chad Burdyshaw, Mitchel D. Horton, Lonnie D. Crosby, R. Glenn Brook, Frank Skidmore. 6 [doi]
• A Parallel Evolutionary Algorithm for Subset Selection in Causal Inference ModelsWendy K. Tam Cho, Yan Y. Liu. 7 [doi]
• Three Dimensional Simulations of Fluid Flow and Heat Transfer with Spectral Element MethodDon Liu, Yonglai Zheng, Arden Moore. 8 [doi]
• Performance and Scalability Analysis for Parallel Reservoir Simulations on Three Supercomputer ArchitecturesHui Liu, Peng Zhang, Kun Wang, Bo Yang, Zhangxin Chen. 9 [doi]
• Implementation of Simple XSEDE-Like Clusters: Science Enabled and Lessons LearnedEric Coulter, Jeremy Fischer, Barbara Hallock, Richard Knepper, Craig A. Stewart. 10 [doi]
• A Scalable High-performance Topographic Flow Direction Algorithm for Hydrological Information AnalysisKornelijus Survila, Ahmet Artu Yildirim, Ting Li, Yan Y. Liu, David G. Tarboton, Shaowen Wang. 11 [doi]
• Using High Performance Computing to Model Cellular EmbryogenesisGerard Vanloo, Chung Ng, Kison Osborne, Kwai Wong, Ben Ramsey, Dali Wang, Zhirong Bao. 12 [doi]
• Delayed Update Algorithms for Quantum Monte Carlo Simulation on GPU: Extended AbstractTyler McDaniel, Eduardo F. D'Azevedo, Ying Wai Li, Paul R. C. Kent, Ming Wong, Kwai Wong. 13 [doi]
• Efficient Primitives for Standard Tensor Linear AlgebraDavid M. Rogers. 14 [doi]
• Tools for studying populations and timeseries of neuroanatomy enabled through GPU acceleration in the Computational Anatomy GatewayDaniel Jacob Tward, Anthony Kolasny, Chelsea S. Sicat, Timothy Brown, Michael I. Miller. 15 [doi]
• Minimization of Xeon Phi Core Use with Negligible Execution Time ImpactRoberto Camacho Barranco, Patricia J. Teller, Michael Gerndt. 16 [doi]
• Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq dataNoushin Ghaffari, Jordi Abante, Raminder Singh, Philip D. Blood, Charles D. Johnson. 17 [doi]
• Estimating the Accuracy of User Surveys for Assessing the Impact of HPC SystemsDavid Hart, Melissa Rishel, Doug Nychka. 18 [doi]
• Cross-Accelerator Performance ProfilingEsthela Gallardo, Patricia J. Teller, Arturo Argueta, Jaime Jaloma. 19 [doi]
• Improving the Scalability of a Charge Detection Mass Spectrometry WorkflowScott McClary, Robert Henschel, Abhinav Thota, Holger Brunst, Benjamin Draper. 20 [doi]
• Scaling GIS analysis tasks from the desktop to the cloud utilizing contemporary distributed computing and data management approaches: A case study of project-based learning and cyberinfrastructure conceptsT. L. Swetnam, J. D. Pelletier, C. Rasmussen, N. R. Callahan, N. Merchant, E. Lyons, M. Rynge, Yan Liu 0009, Viswanath Nandigam, Christopher J. Crosby. 21 [doi]
• Jetstream: performance, early experiences, and early resultsCraig A. Stewart, David Y. Hancock, Matthew Vaughn, Jeremy Fischer, Tim Cockerill, Liming Lee, Nirav Merchant, Therese Miller, John Michael Lowe, Daniel C. Stanzione Jr., James Taylor, Edwin Skidmore. 22 [doi]
• Experiences and Benefits of Running RDMA Hadoop and Spark on SDSC CometMahidhar Tatineni, Xiaoyi Lu, Dong Ju Choi, Amit Majumdar, Dhabaleswar K. Panda. 23 [doi]
• User Managed Virtual Clusters in CometRick Wagner, Philip M. Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineni, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox. 24 [doi]
• Containers in Research: Initial Experiences with Lightweight InfrastructureSpencer Julian, Michael Shuey, Seth Cook. 25 [doi]
• An Overview of the Implementation of CILogon at NICSTabitha K. Samuel, John Long, Gary L. Rogers. 26 [doi]
• Globus: Recent Enhancements and Future PlansKyle Chard, Steven Tuecke, Ian T. Foster. 27 [doi]
• BIC-LSU: Big Data Research Integration with Cyberinfrastructure for LSUChui-Hui Chiu, Nathan Lewis, Dipak Kumar Singh, Arghya Kusum Das, Mohammad M. Jalazai, Richard Platania, Sayan Goswami, Kisung Lee, Seung-Jong Park. 28 [doi]
• Developing Applications with Networking Capabilities via End-to-End SDN (DANCES)Victor Hazlewood, Kathy Benninger, Gregory D. Peterson, Jason Charcalla, Benny Sparks, Jesse Hanley, Andrew Adams, Bryan Learn, Robert Budden, Derek Simmel, Joseph Lappa, Jared Yanovich. 29 [doi]
• Library Function Tracking with XALTReuben D. Budiardja, Kapil Agrawal, Mark R. Fahey, Robert T. McLay, Doug James. 30 [doi]
• A web interface for XALT log data analysisRuizhu Huang, Weijia Xu, Robert McLay. 31 [doi]
• A Quantitative Analysis of Node Sharing on HPC Clusters Using XDMoD Application KernelsNikolay A. Simakov, Robert L. DeLeon, Joseph P. White, Thomas R. Furlani, Martins Innus, Steven M. Gallo, Matthew D. Jones, Abani K. Patra, Benjamin D. Plessinger, Jeanette M. Sperhac, Thomas Yearke, Ryan Rathsam, Jeffrey T. Palmer. 32 [doi]
• An Architecture for Automatic Deployment of Brown Dog Services at Scale into Diverse Computing InfrastructuresSmruti Padhy, Jay Alameda, Rob Kooper, Rui Liu, Sandeep Puthanveetil Satheesan, Inna Zharnitsky, Gregory Jansen, Michael C. Dietze, Praveen Kumar, Jong Lee, Richard Marciano, Luigi Marini, Barbara S. Minsker, Chris Navarro, Marcus Slavenas, William Sullivan, Kenton McHenry. 33 [doi]
• In-memory Integration of Existing Software Components for Parallel Adaptive Unstructured Mesh WorkflowsCameron W. Smith, Brian Granzow, Dan Ibanez, Onkar Sahni, Kenneth E. Jansen, Mark S. Shephard. 34 [doi]
• A Virtual File System for On-Demand Processing of Multidimensional DatasetsArthur Wetzel, Jennifer Bakal, Markus Dittrich. 35 [doi]
• Optimization of 3D Fusion DevicesFrancisco Castejón, Antonio Gómez-Iglesias, Antonio López-Fraguas. 36 [doi]
• CloudBridge: a Simple Cross-Cloud Python LibraryNuwan Goonasekera, Andrew Lonie, James Taylor, Enis Afgan. 37 [doi]
• Introducing a New Client/Server Framework for Big Data Analytics with the R LanguageDrew Schmidt, Wei-Chen Chen, George Ostrouchov. 38 [doi]
• TopoLens: Building a CyberGIS Community Data Service for Enhancing the Usability of High-resolution National Topographic DatasetsHao Hu, Xingchen Hong, Jeff Terstriep, Yan Y. Liu, Michael P. Finn, Johnathan Rush, Jeffrey Wendel, Shaowen Wang. 39 [doi]
• Anatomy of the SEAGrid Science GatewaySupun Nakandala, Sudhakar Pamidighantam, Shameera Yodage, Nipurn Doshi, Eroma Abeysinghe, Chathuri Peli Kankanamalage, Suresh Marru, Marlon E. Pierce. 40 [doi]
• The XSEDE BLAST Gateway: Leveraging Campus Development for the XSEDE CommunityChristopher S. Thompson, Steven M. Clark, Carol X. Song. 41 [doi]
• Extended Batch Sessions and Three-Phase Debugging: Using DMTCP to Enhance the Batch EnvironmentRohan Garg, Jiajun Cao, Kapil Arya, Gene Cooperman, Jérôme Vienne. 42 [doi]
• Open OnDemand: Transforming Computational Science Through Omnidisciplinary Software CyberinfrastructureDavid E. Hudak, Douglas Johnson, Jeremy Nicklas, Eric Franz, Brian McMichael, Basil Gohar. 43 [doi]
• From OpenACC to OpenMP 4: Toward Automatic TranslationNawrin Sultana, Alexander Calvert, Jeffrey L. Overbey, Galen Arnold. 44 [doi]
• Understanding the Evolving Cyberinfrastructure Needs of the Neuroscience CommunityAmit Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Ted Carnevale. 45 [doi]
• User behavior and usage patterns for a highly accessed science gatewayMark A. Miller, Terri Schwartz, Wayne Pfeiffer. 46 [doi]
• Case Study: Microservice Evolution and Software Lifecycle of the XSEDE User Portal APIWalter Scarborough, Carrie Arnold, Maytal Dahan. 47 [doi]
• SeedMe: A scientific data sharing and collaboration platformAmit Chourasia, Mona Wong-Barnum, Dmitry Mishin, David R. Nadeau, Michael L. Norman. 48 [doi]
• Practical Monitoring of Resource Utilization for HPC ApplicationsAntonio Gómez-Iglesias, Carlos Rosales, Todd Evans. 49 [doi]
• The 10 Attributes that Drive Adoption and Diffusion of Computational Tools in E-ScienceKerk F. Kee, Mona Sleiman, Michelle Williams, Dominique Stewart. 50 [doi]
• An Agile Approach for Engaging Students in Research and DevelopmentRitu Arora, Sukrit Sondhi. 51 [doi]
• Assisting Bioinformatics Programs at Minority Institutions: Needs Assessment, and Lessons Learned - A Look at an Internship ProgramRicardo González-Méndez, Jimmy Torres, Pallavi Ishwad, Hugh B. Nicholas Jr., Alexander Ropelewski. 52 [doi]
• Challenges and Accomplishments of the Computational Science Undergraduate Research Experiences ProgramKwai Wong, Gregory D. Peterson. 53 [doi]
• Orion: Discovery Environment for HPC Research and Bridging XSEDE ResourcesSemir Sarajlic, Neranjan Edirisinghe, Yuriy Lukinov, Michael Walters, Brock Davis, Gregori Faroux. 54 [doi]
• XSEDE Training: Achieving Access and InclusionLinda Akli, Jay Alameda, Steven I. Gordon, Marcela Madrid, Lorna I. Rivera. 55 [doi]
• Rescuing Lost History: Using Big Data to Recover Black Women's Lived ExperiencesRuby Mendenhall, Nicole Brown, Michael L. Black, Mark Van Moer, Ismini Lourentzou, Karen Flynn, Malaika Mckee, Assata Zerai. 56 [doi]
• The Advanced Cyberinfrastructure Research and Education Facilitators Virtual Residency: Toward a National Cyberinfrastructure WorkforceHenry Neeman, Aaron Bergstrom, Dana Brunson, Carrie L. Ganote, Zane Gray, Brian Guilfoos, Robert Kalescky, Evan Lemley, Brian G. Moore, Sai Kumar Ramadugu, Alana Romanella, Johnathan Rush, Andrew H. Sherman, Brian Stengel, Dan Voss. 57 [doi]
• Visualization of Geodynamo SimulationsAmit Chourasia, Maggie Avery, Ashley Willis, Sam Greenwood, Christopher J. Davies, Catherine Constable, David Gubbins. 58 [doi]
• Insights into Alzheimer's Disease: Molecular Dynamics (MD) Simulations of Peptide-Membrane InteractionsAnne Brown, Nicholas F. Polys, David Bevan, Ayat Mohammed. 59 [doi]