Table of Contents

• Cyberinfrastructure of a Multi-Petabyte Microscopy Resource for Neuroscience ResearchKathy Benninger, Greg Hood, Derek Simmel, Luke Tuite, Arthur W. Wetzel, Alexander Ropelewski, Simon C. Watkins, Alan M. Watson, Marcel Bruchez. 1-7 [doi]
• JetLag: An Interactive, Asynchronous Array Computing EnvironmentSteven R. Brandt, Alex Bigelow, Sayef Azad Sakin, Katy Williams, Katherine E. Isaacs, Kevin A. Huck, Rod Tohid, Bibek Wagle, Shahrzad Shirzad, Hartmut Kaiser. 8-12 [doi]
• Grendel: Bare Metal Provisioning System for High Performance ComputingAndrew E. Bruno, Salvatore J. Guercio, Doris Sajdak, Tony Kew, Matthew D. Jones. 13-18 [doi]
• SLATE: Monitoring Distributed Kubernetes ClustersGabriele Carcassi, Joe Breen, Lincoln Bryant, Robert W. Gardner, Shawn McKee, Christopher N. Weaver. 19-25 [doi]
• Cloud and on-premises data center usage, expenditures, and approaches to return on investment: A survey of academic research computing organizationsAlan Chalker, Curtis W. Hillegas, Alan Sill, Sharon Broude Geva, Craig A. Stewart. 26-33 [doi]
• OAuth SSH with Globus AuthJason Alt, Rachana Ananthakrishnan, Kyle Chard, Ryan Chard, Ian T. Foster, Lee Liming, Steven Tuecke. 34-40 [doi]
• HAL: Computer System for Scalable Deep LearningVolodymyr V. Kindratenko, Dawei Mu, Yan Zhan, John Maloney, Sayed Hadi Hashemi, Benjamin Rabe, Ke Xu, Roy H. Campbell, Jian Peng 0001, William Gropp. 41-48 [doi]
• Bear: Cyberinfrastructure for Long-Tail Researchers at the Federal Reserve Bank of Kansas CityB. J. Lougee, Michael Robinson, Chris Stackpole, Mark Watson, Greg Woodward. 49-55 [doi]
• Workflow Submit Nodes as a Service on Leadership Class SystemsGeorge Papadimitriou, Karan Vahi, Jason Kincl, Valentine Anantharaj, Ewa Deelman, Jack Wells. 56-63 [doi]
• Informing the On/Off-prem Cloud Discussion in Higher EducationSrijith Rajamohan, Robert E. Settlage. 64-71 [doi]
• Deploying large fixed file datasets with SquashFS and SingularityPierre Rioux, Gregory Kiar, Alexandre Hutton, Alan C. Evans, Shawn T. Brown. 72-76 [doi]
• A Research Computing and Data Capabilities Model for Strategic Decision-MakingPatrick Schmitz, Claire Mizumoto, John Hicks, Dana Brunson, Gail Krovitz, James B. Bottum, Joel Cutcher-Gershenfeld, Karen Wetzel, Thomas Cheatham. 77-84 [doi]
• Demonstrating a Pre-Exascale, Cost-Effective Multi-Cloud Environment for Scientific Computing: Producing a fp32 ExaFLOP hour worth of IceCube simulation data in a single workdayIgor Sfiligoi, David Schultz, Benedikt Riedel, Frank Würthwein, Steve Barnet, Vladimir Brik. 85-90 [doi]
• Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing EcosystemsJoe Stubbs, Julia Looney, Marjo Poindexter, Elias Chalhoub, Gregory J. Zynda, Erik S. Ferlanti, Matthew Vaughn, John M. Fonner, Maytal Dahan. 91-98 [doi]
• An Open Ecosystem for Pervasive Use of Persistent IdentifiersRachana Ananthakrishnan, Kyle Chard, Mike D'Arcy, Ian T. Foster, Carl Kesselman, Brendan McCollam, Jim Pruyne, Philippe Rocca-Serra, Robert Schuler, Rick Wagner. 99-105 [doi]
• Frontera: The Evolution of Leadership Computing at the National Science FoundationDan Stanzione, John West, R. Todd Evans, Tommy Minyard, Omar Ghattas, Dhabaleswar K. Panda. 106-111 [doi]
• Monitoring and Analysis of Power Consumption on HPC Clusters using XDMoDJoseph P. White, Martins Innus, Robert L. DeLeon, Matthew D. Jones, Thomas R. Furlani. 112-119 [doi]
• MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker DataCédric Arisdakessian, Sean B. Cleveland, Mahdi Belcaid. 120-124 [doi]
• Building an Interactive Workbench Environment for Single Cell Genomics ApplicationsD. Balamurugan, Kristina Plazonic, Kevin Abbey, Seema Husain, Neeraja Syed. 125-131 [doi]
• Design and Deployment of Photo2Building: A Cloud-based Procedural Modeling Tool as a ServiceManush Bhatt, Rajesh Kalyanam, Gen Nishida, Liu He, Christopher May, Dev Niyogi, Daniel G. Aliaga. 132-138 [doi]
• Research Computing Infrastructure and Researcher Engagement: Notes from NeuroscienceRajendra Bose, Alexander Antoniades, John Pellman. 139-143 [doi]
• VisSnippets: A Web-Based System for Impromptu Collaborative Data Exploration on Large DisplaysAndrew Burks, Luc Renambot, Andrew E. Johnson. 144-151 [doi]
• NLP Workflows for Computational Social Science: Understanding Triggers of State-Led Mass KillingsTimothy Burley, Lorissa Humble, Charles Sleeper, Abigail Sticha, Angela Chesler, Patrick Regan, Ernesto Verdeja, Paul Brenner. 152-159 [doi]
• An extensible Django-based web portal for Apache AiravataMarcus Christie, Suresh Marru, Eroma Abeysinghe, Dimuthu Upeksha, Sudhakar Pamidighantam, Stephen Paul Adithela, Eldho Mathulla, Aarushi Bisht, Shivam Rastogi, Marlon E. Pierce. 160-167 [doi]
• Toward a Data Lifecycle Model for NSF Large FacilitiesLaura Christopherson, Anirban Mandal, Erik Scott, Ilya Baldin. 168-175 [doi]
• Implementing a Loosely-Coupled Integrated Assessment Model in the Pegasus Workflow Management SystemPatrick Clemins, Scott Turnbull, Morgan Rodgers, Asim Zia. 176-180 [doi]
• Tapis API Development with Python: Best Practices In Scientific REST API Implementation: Experience implementing a distributed Stream APISean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Michale Packard, Julia Looney, Steve Terry, Richard Cardone, Maytal Dahan, Gwen A. Jacobs. 181-187 [doi]
• Scientific Data Annotation and Dissemination: Using the 'Ike Wai Gateway to Manage Research DataSean B. Cleveland, Jennifer Geis, Gwen A. Jacobs. 188-197 [doi]
• Implementing a Prototype System for 3D Reconstruction of Compressible FlowChristiaan P. Gribble, Victor Eijkhout, Paul A. Navrátil. 198-206 [doi]
• GeoEDF: An Extensible Geospatial Data Framework for FAIR ScienceRajesh Kalyanam, Lan Zhao, Carol X. Song, Venkatesh M. Merwade, Jian Jin, Uris Baldos, Jack Smith. 207-214 [doi]
• Accelerated Real-time Network Monitoring and Profiling at Scale using OSU INAMPouya Kousha, Kamal Raj S. D., Hari Subramoni, Dhabaleswar K. Panda, H. Na, Trey Dockendorf, Karen Tomko. 215-223 [doi]
• Log Discovery for Troubleshooting Open Distributed Systems with TLQNathaniel Kremer-Herman, Douglas Thain. 224-231 [doi]
• Cluster Usage Policy Enforcement Using Slurm Plugins and an HTTP APIMatthew Li, Nicolas Chan, Viraat Chandra, Krishna Muriki. 232-238 [doi]
• The Hawai'i Rainfall Analysis and Mapping Application (HI-RAMA): Decision Support and Data Visualization for Statewide Rainfall DataJared H. McLean, Sean B. Cleveland, Matthew Lucas, Ryan Longman, Thomas W. Giambelluca, Jason Leigh, Gwen A. Jacobs. 239-245 [doi]
• Using Containers to Create More Interactive Online Training and Education MaterialsSusan Mehringer, Brandon Barker. 246-251 [doi]
• FutureWater Indiana: A science gateway for spatio-temporal modeling of water in Wabash basin with a focus on climate changeJennifer R. Dierauer, Chen Zhu, Lei Gong, Alan Walsh, Sudhakar Pamidighantam, Jun Wang, Marcus Christie, Eroma Abeysinghe. 252-261 [doi]
• A Science Gateway for Simulating the Economics of Carbon Sequestration Technologies: SimCCS2.0Sudhakar Pamidighantam, Jun Wang, Marcus Christie, Eroma Abeysinghe, Kevin M. Ellett, Ryan Kammer, Sean Yaw, Richard S. Middleton, Brendan A. Hoover. 262-269 [doi]
• Atomic and Molecular Scattering Applications in an Apache Airavata Science GatewayBarry I. Schneider, Klaus Bartschat, Oleg Zatsarinny, Kathryn R. Hamilton, Igor Bray, Armin Scrinzi, Fernando Martin, Jesus Gonzalez Vasquez, Jonathan Tennyson, Jimena D. Gorfinkiel, Robert Lucchesse, Sudhakar Pamidighantam. 270-277 [doi]
• Custos: Security Middleware for Science GatewaysIsuru Ranawaka, Suresh Marru, Juleen Graham, Aarushi Bisht, Jim Basney, Terry Fleury, Jeff Gaynor, Dimuthu Wannipurage, Marcus Christie, Alexandru Mahmoud, Enis Afgan, Marlon E. Pierce. 278-284 [doi]
• PEGR: a management platform for ChIP-based next generation sequencing pipelinesDanying Shao, Gretta Kellogg, Shaun Mahony, William K. M. Lai, B. Franklin Pugh. 285-292 [doi]
• VisQueue: An Analytical Dashboard for Science Exploration on HPC SystemsAndrew J. Solis, Gregory Foss, Craig Jansen, Mathew Stelmaszek. 293-298 [doi]
• ICEBERG: Imagery Cyber-infrastructure and Extensible Building blocks to Enhance Research in the Geosciences. (A Research Programmer's Perspective)Bradley D. Spitzbart, Heather J. Lynch, Matteo Turilli, Shantenu Jha. 299-303 [doi]
• Tailoring Data Visualization to Diversely Informed End UsersRyan Theriot, James Hutchison, Nurit Kirshenbaum, Jason Leigh. 304-310 [doi]
• Reproducible and Portable Workflows for Scientific Computing and HPC in the CloudPeter Vaillancourt, Bennett Wineholt, Brandon Barker, Plato Deliyannis, Jackie Zheng, Akshay Suresh, Adam Brazier, Rich Knepper, Rich Wolski. 311-320 [doi]
• Environmental Visualization: Moving Beyond the RainbowsStephanie Zeller, Francesca Samsel, Paul Navártil. 321-326 [doi]
• Building Science Gateways for HumanitiesJun Zhou, Karen Smith, Greg Wilsbacher, Paul Sagona, David Reddy, Ben Torkian. 327-332 [doi]
• Autonomous Vehicle Control Using a Deep Neural Network and Jetson NanoRocco Febbo, Brendan Flood, Julian Halloy, Patrick Lau, Kwai Wong, Alan Ayala. 333-338 [doi]
• Exploring Collections of research publications with Human Steerable AIAlberto González Martínez, Billy Troy Wooton, Nurit Kirshenbaum, Dylan Kobayashi, Jason Leigh. 339-348 [doi]
• A Pilot Benchmarking Study of Deep Neural Network Performance on Low Magnification Pathology Region-of-Interest ImagesChristopher Pondoc, Alexander Plisov, Yanling Liu. 349-357 [doi]
• Extracting and Analyzing Deep Learning Features for Discriminating Historical Art: Deep Learning Features and ArtPaul Rodríguez, Alan B. Craig, Alison Langmead, Christopher J. Nygren. 358-363 [doi]
• Evaluation of Clustering Techniques for GPS Phenotyping Using Mobile Sensor DataZachary S. Tschirhart, Karl W. Schulz. 364-371 [doi]
• On Multiview Robustness of 3D Adversarial AttacksPhilip Yao, Andrew So, Tingting Chen, Hao Ji. 372-378 [doi]
• CyberAmbassadors: Results from Pilot Testing a New Professional Skills CurriculumAstri Briliyanti, Julie Wilson Rojewski, Katy Luchini-Colbry, Dirk Colbry. 379-385 [doi]
• Best Practices in Project Management in a Large, Distributed Organization: Lessons Learned from XSEDELeslie Froeschl, Scott Wells, Marques Bland. 386-392 [doi]
• Fostering Collaboration Among Organizations in the Research Computing and Data EcosystemSharon Broude Geva, Dana Brunson, Thomas Cheatham III, James Deaton, James Griffioen, Curtis W. Hillegas, Douglas M. Jennewein, Gail Krovitz, Tobin Magle, Patrick Schmitz, Karen Tomko, James C. Wilgenbusch. 393-401 [doi]
• Northeast Cyberteam: Workforce Development for Research Computing at Small and Mid-sized InstitutionsJohn Goodhue, Julie Ma, Adrian Del Maestro, Sia Najafi, Bruce Segee, Scott Valcourt, Ralph Zottola. 402-406 [doi]
• From novice to expert: Supporting all levels of computational expertise in reproducible research methodsKate Hertweck, Carly Strasser. 407-413 [doi]
• NCSA Internship Program for Cyberinfrastructure ProfessionalsDaniel Lapine, Volodymyr V. Kindratenko, Luisa-Maria Rosu. 414-420 [doi]
• Cyberinfrastructure Facilitation Skills Training via the Virtual Residency ProgramHenry Neeman, David Akin, Hussein M. Al-Azzawi, Kevin L. Brandt, Jamene Brooks Kieffer, Dana Brunson, Dirk Colbry, Sandra Gesing, Anna Klimaszewski-Patterson, Claire Mizumoto, Joy A. Pine-Thomas, Anita Z. Schwartz, Horst Severini, Mohammed Tanash, Daniel Voss. 421-428 [doi]
• Introducing Computing and Technology through Problem-Solving in Discrete MathematicsRobert S. Sinkovits, Osvaldo D. Soto. 429-435 [doi]
• Building a Gateway Infrastructure for Interactive Cyber Training and Workforce DevelopmentLan Zhao, Carol X. Song, Larry Biehl, Venkatesh Merwade, Matthew Huber, Jing Liu, Uris Baldos, Ilya Shunko. 436-443 [doi]
• Refactoring a statistical package for demanding memory loads: Adapting R for high performance telemetry data analyticsRebecca Belshe, Peter Schlichting, Gil Speyer. 444-447 [doi]
• Legion: A K-12 HPC Outreach and Education ClusterCaughlin Bohn, Carrie Brown. 448-451 [doi]
• Augmented Reality: Telehealth Demonstration ApplicationNicholas Boyd, Jacob Hawkins, Thomas Yang, Scott A. Valcourt. 452-455 [doi]
• Great Plains CyberTeam: A Regional Mentor Approach to Cyberinfrastructure Workforce Development and AdvancementCarrie Brown, Ryan Johnson, Kate Adams, Kevin Brandt, Adison Kleinsasser, James Deaton, Timothy Middlekoop. 456-460 [doi]
• TopPIC Gateway: A Web Gateway for Top-Down Mass Spectrometry Data InterpretationIn Kwon Choi, Eroma Abeysinghe, Eric Coulter, Suresh Marru, Marlon E. Pierce, Xiaowen Liu. 461-464 [doi]
• SciTokens SSH: Token-based Authentication for Remote Login to Scientific Computing EnvironmentsYou Alex Gao, Jim Basney, Alex Withers. 465-468 [doi]
• Online Single-cell RNA-seq Data Denoising with Transfer LearningBowei Kang, Eroma Abeysinghe, Divyansh Agarwal, Quanli Wang, Sudhakar Pamidighantam, Mo Huang, Nancy R. Zhang, Jingshu Wang. 469-472 [doi]
• Optimizing a Specialized Convolutional Neural Network in a Supercomputing Environment Using Tensorflow and VisItBrian Leonard, Minyue Fan, Joel S. Welling. 473-476 [doi]
• Use Case Methodology in XSEDE System IntegrationLee Liming, Jim Basney, John-Paul Navarro, Shava Smallen. 477-480 [doi]
• Preparing Women for Leadership in IT-What WINS Is DoingMarla Meehl, Wendy Huntoon, Maria Kalyvaki. 481-483 [doi]
• Research Workflows - Towards reproducible science via detailed provenance tracking in Open Science ChainViswanath Nandigam, Kai Lin, Manu Shantharam, Scott Sakai, Subhashini Sivagnanam. 484-486 [doi]
• Secure XSEDE Information APIsJohn-Paul Navarro, Eric Blau, Lee Liming. 487-490 [doi]
• SGCI Incubator and its Role in Workforce Development: Lessons Learned from Training, Consultancy, and Building a Community of Community-Builders for Science GatewaysPaul Parsons, Sandra Gesing, Claire Stirm, Michael G. Zentner. 491-494 [doi]
• Demonstrating 100 Gbps in and out of the public CloudsIgor Sfiligoi. 495-499 [doi]
• Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitudeIgor Sfiligoi, Daniel McDonald, Rob Knight. 500-504 [doi]
• Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud PlatformSubhashini Sivagnanam, Wyatt Gorman, Donald Doherty, Samuel A. Neymotin, Stephen Fang, Hermine Hovhannisyan, William W. Lytton, Salvador Dura-Bernal. 505-509 [doi]
• Neuroscience Gateway Enabling Large Scale Modeling and Data Processing in Neuroscience ResearchSubhashini Sivagnanam, Kenneth Yoshimoto, Ted Carnevale, Dave Nadeau, Martin Kandes, Trevor Petersen, Dung Truong, Ramón Martínez-Cancino, Arnaud Delorme, Scott Makeig, Amit Majumdar. 510-513 [doi]
• AskCI Server: Collaborative knowledge baseVanessa V. Sochat. 514-517 [doi]
• Using Visualization of Performance Data to Investigate Load Imbalance of a Geophysics Parallel ApplicationAna Luisa Veroneze Solórzano, Lucas Leandro Nesi, Lucas Mello Schnorr. 518-521 [doi]
• Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and ApplicationsJoe Stubbs, Suresh Marru, Daniel Mejia 0003, Daniel S. Katz, Kyle Chard, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner. 522-525 [doi]
• Benchmark informed software upgrades on Quest, Northwestern's HPC clusterSajid Ali, Alper Kinaci, Alexander John Mamach. 526-529 [doi]
• Building a Scalable Infrastructure: To grow computational research and enhance collaboration across the research enterpriseRavi Tripathi, William Stonewall Monroe, Mike Hanby, John-Paul Robinson. 530-533 [doi]
• Computational Study in a PUI using XSEDE Resources and ECSS SupportEmily Z. Wang, Yi-Gui Wang. 534-537 [doi]
• Toward Dynamically Controlling Slurm's Classic Fairshare AlgorithmJason Yalim. 538-542 [doi]
• Beating of the Amazon: Visualizing the Diurnal Cycle of the Amazonian HydroclimatologyDavid Bock, Francina Dominguez, Jorge Eiras-Barca. 543-544 [doi]
• Exploration of Coral Reefs in Hawai'i through Virtual Reality: Hawaiian Coral Reef Museum VRFrancis Ray Cristobal, Michael Dodge, Briana Noll, Nickolas Rosenberg, John Burns, Joseph Sanchez, Drew Gotshalk, Kailey Pascoe, Alexandra Runyan. 545-546 [doi]
• Visualization Techniques for Data on 3D Grids: Raleigh-Taylor Simulation ExampleEliot Feibush. 547-548 [doi]
• LandSAGE: A decision support tool for monitoring and mitigation of natural disastersCale Guillermo, Billy Troy Wooton, Dylan Kobayashi. 549-550 [doi]
• Using VisIt to Evaluate the Accuracy of a Convolutional Neural NetworkBrian Leonard, Minyue Fan, Joel Welling. 551-552 [doi]
• A VR Environment for Demonstrating the Impact of Sea Level Rise on Hawai'iJared H. McLean, Katie Taladay, Jin Dong. 553-554 [doi]
• RadarViewer : Visualizing the dynamics of multivariate dataNgan Nguyen, Jon Hass, Yong Chen, Jie Li, Alan Sill, Tommy Dang. 555-556 [doi]