Abstract is missing.
- GFBA: A Biclustering Algorithm for Discovering Value-Coherent BiclustersXubo Fei, Shiyong Lu, Horia F. Pop, Lily R. Liang. 1-12 [doi]
- Significance Analysis of Time-Course Gene Expression ProfilesFang-Xiang Wu. 13-24 [doi]
- Data-Driven Smoothness Enhanced Variance Ratio Test to Unearth Responsive Genes in 0-Time Normalized Time-Course Microarray DataJuntao Li, Jianhua Liu, Karuturi R. Krishna Murthy. 25-36 [doi]
- Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear ProgrammingSrinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ravi, Russell Schwartz. 37-48 [doi]
- A Multi-Stack Based Phylogenetic Tree Building MethodRóbert Busa-Fekete, András Kocsor, Csaba Bagyinka. 49-60 [doi]
- A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical PerformanceGuohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller. 61-72 [doi]
- A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with ReplicationsQihua Tan, Jesper Dahlgaard, Basem M. Abdallah, Werner Vach, Moustapha Kassem, Torben A. Kruse. 73-84 [doi]
- Clustering Algorithms Optimizer: A Framework for Large DatasetsRoy Varshavsky, David Horn, Michal Linial. 85-96 [doi]
- Ranking Function Based on Higher Order Statistics (RF-HOS) for Two-Sample Microarray ExperimentsJahangheer S. Shaik, Mohammed Yeasin. 97-108 [doi]
- Searching for Recombinant Donors in a Phylogenetic Network of Serial SamplesPatricia Buendia, Giri Narasimhan. 109-120 [doi]
- Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple GallsArvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao. 121-132 [doi]
- Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood ApproachFrederick Cohan, Danny Krizanc, Yun Lu. 133-144 [doi]
- Invited Talk: Modern Homology SearchMing Li. 145 [doi]
- Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression DataPramod K. Gupta, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Satoru Miyano. 146-157 [doi]
- Discovering Relations Among GO-Annotated Clusters by Graph Kernel MethodsItalo Zoppis, Daniele Merico, Marco Antoniotti, Bud Mishra, Giancarlo Mauri. 158-169 [doi]
- An Empirical Comparison of Dimensionality Reduction Methods for Classifying Gene and Protein Expression DatasetsGeorge Lee, Carlos Rodriguez, Anant Madabhushi. 170-181 [doi]
- NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid EnvironmentRobert J. Calin-Jageman, Chao Xie, Yi Pan, Art Vandenberg, Paul S. Katz. 182-191 [doi]
- An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence DatasetsLeonid Zaslavsky, Yiming Bao, Tatiana A. Tatusova. 192-202 [doi]
- Wavelet Image Interpolation (WII): A Wavelet-Based Approach to Enhancement of Digital Mammography ImagesGordana Derado, F. DuBois Bowman, Rajan Patel, Mary Newell, Brani Vidakovic. 203-214 [doi]
- High Level Programming Environment System for Protein Structure DataYanchao Wang, Rajshekhar Sunderraman, Piyaphol Phoungphol. 215-226 [doi]
- Finding Minimal Sets of Informative Genes in Microarray DataKung-Hua Chang, Yong Kyun Kwon, Douglas Stott Parker Jr.. 227-236 [doi]
- Noise-Based Feature Perturbation as a Selection Method for Microarray DataLi Chen, Dmitry B. Goldgof, Lawrence O. Hall, Steven Eschrich. 237-247 [doi]
- Efficient Generation of Biologically Relevant Enriched Gene SetsIgor Trajkovski, Nada Lavrac. 248-259 [doi]
- Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome DataSudha Balla, Sanguthevar Rajasekaran. 260-269 [doi]
- A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNAScott F. Smith 0002. 270-281 [doi]
- Extensions of Naive Bayes and Their Applications to BioinformaticsRaja Loganantharaj. 282-292 [doi]
- The Solution Space of Sorting by ReversalsMarília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier. 293-304 [doi]
- A Fast and Exact Algorithm for the Perfect Reversal Median ProblemMatthias Bernt, Daniel Merkle, Martin Middendorf. 305-316 [doi]
- Genomic Signatures from DNA Word GraphsLenwood S. Heath, Amrita Pati. 317-328 [doi]
- Enhancing Motif Refinement by Incorporating Comparative Genomics DataErliang Zeng, Giri Narasimhan. 329-337 [doi]
- Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched RegionsHyunmin Kim, Katherina J. Kechris, Lawrence Hunter. 338-349 [doi]
- Enhanced Prediction of Cleavage in Bovine Precursor SequencesAllison N. Tegge, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, Bruce R. Southey. 350-360 [doi]
- Invited Talk: A Computational Study of Bidirectional Promoters in the Human GenomeMary Qu Yang, Laura Elnitski. 361-371 [doi]
- The Identification of Antisense Gene Pairs Through Available SoftwareMark J. Lawson, Liqing Zhang. 372-381 [doi]
- Inferring Weak Adaptations and Selection Biases in Proteins from Composition and Substitution MatricesSteinar Thorvaldsen, Elinor Ytterstad, Tor Flå. 382-393 [doi]
- Markov Model Variants for Appraisal of Coding Potential in Plant DNAMichael E. Sparks, Volker Brendel, Karin S. Dorman. 394-405 [doi]
- Predicting Palmitoylation Sites Using a Regularised Bio-basis Function Neural NetworkZheng Rong Yang. 406-417 [doi]
- A Novel Kernel-Based Approach for Predicting Binding Peptides for HLA Class II MoleculesHao Yu, Minlie Huang, Xiaoyan Zhu, Yabin Guo. 418-429 [doi]
- A Database for Prediction of Unique Peptide Motifs as Linear EpitopesMargaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai. 430-440 [doi]
- A Novel Greedy Algorithm for the Minimum Common String Partition ProblemDan He. 441-452 [doi]
- An Efficient Algorithm for Finding Gene-Specific Probes for DNA MicroarraysMun-Ho Choi, In-Seon Jeong, Seung-Ho Kang, Hyeong-Seok Lim. 453-464 [doi]
- Multiple Sequence Local Alignment Using Monte Carlo EM AlgorithmChengpeng Bi. 465-476 [doi]
- Cancer Class Discovery Using Non-negative Matrix Factorization Based on Alternating Non-negativity-Constrained Least SquaresHyunsoo Kim, Haesun Park. 477-487 [doi]
- A Support Vector Machine Ensemble for Cancer Classification Using Gene Expression DataChen Liao, Shutao Li. 488-495 [doi]
- Combining SVM Classifiers Using Genetic Fuzzy Systems Based on AUC for Gene Expression Data AnalysisXiujuan Chen, Yichuan Zhao, Yan-Qing Zhang, Robert W. Harrison. 496-505 [doi]
- A BP-SCFG Based Approach for RNA Secondary Structure Prediction with Consecutive Bases Dependency and Their Relative Positions InformationDandan Song, Zhidong Deng. 506-517 [doi]
- Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular LatticeMinghui Jiang, Martin Mayne, Joel Gillespie. 518-529 [doi]
- Statistical Estimate for the Size of the Protein Structural VocabularyXuezheng Fu, Bernard Chen, Yi Pan, Robert W. Harrison. 530-538 [doi]
- Coclustering Based Parcellation of Human Brain Cortex Using Diffusion Tensor MRICui Lin, Shiyong Lu, Danqing Wu, Jing Hua, Otto Muzik. 539-550 [doi]
- An Algorithm for Hierarchical Classification of Genes of Prokaryotic GenomesHongwei Wu, Fenglou Mao, Victor Olman, Ying Xu. 551-563 [doi]
- Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families PredictionMudassir Fayyaz, Asifullah Khan, Adnan Mujahid, Alex Kavokin. 564-576 [doi]
- Invited Talk: Ab Initio Gene Finding Engines: What Is Under the HoodMark Borodovsky. 577 [doi]
- Reconstruction of 3D Structures from Protein Contact MapsMarco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio. 578-589 [doi]
- A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure PredictionGulsah Altun, Hae-Jin Hu, Stefan Gremalschi, Robert W. Harrison, Yi Pan. 590-600 [doi]
- DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling ApproachAmin R. Mazloom, Kalyan Basu, Subhrangsu S. Mandal, Mehran Sorourian, Sajal K. Das. 601-614 [doi]
- Comparative Analysis of Gene-Coexpression Networks Across SpeciesShiquan Wu, Jing Li. 615-626 [doi]
- Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure InformationJizhen Zhao, Dongsheng Che, Liming Cai. 627-637 [doi]
- Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain LevelRoberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo. 638-649 [doi]