Abstract is missing.
- ISMB/ECCB 2004Janet M. Thornton, David Gilbert, Catherine Brooksbank. 1-2 [doi]
- ISMB/ECCB 2004 OrganizationJanet M. Thornton, David Gilbert, Catherine Brooksbank. 3-5 [doi]
- Application of a new probabilistic model for recognizing complex patterns in glycansKiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka. 6-14 [doi]
- A knowledge based approach for representing and reasoning about signaling networksChitta Baral, Karen Chancellor, Nam Tran, Nhan Tran, Anna M. Joy, Michael E. Berens. 15-22 [doi]
- Deconvolving cell cycle expression data with complementary informationZiv Bar-Joseph, Shlomit Farkash, David K. Gifford, Itamar Simon, Roni Rosenfeld. 23-30 [doi]
- Into the heart of darkness: large-scale clustering of human non-coding DNAGill Bejerano, David Haussler, Mathieu Blanchette. 40-48 [doi]
- Automatic Quality Assessment of Peptide Tandem Mass SpectraMarshall W. Bern, David Goldberg, W. Hayes McDonald, John R. Yates III. 49-54 [doi]
- Analysis of domain correlations in yeast protein complexesDoron Betel, Ruth Isserlin-Weinberger, Christopher W. V. Hogue. 55-62 [doi]
- A neural-network-based method for predicting protein stability changes upon single point mutationsEmidio Capriotti, Piero Fariselli, Rita Casadio. 63-68 [doi]
- Splice site identification by idlBNsRobert Castelo, Roderic Guigó. 69-76 [doi]
- Mining frequent patterns in protein structures: a study of protease familiesShann-Ching Chen, Ivet Bahar. 77-85 [doi]
- Selecting biomedical data sources according to user preferencesSarah Cohen Boulakia, Séverine Lair, Nicolas Stransky, Stéphane Graziani, François Radvanyi, Emmanuel Barillot, Christine Froidevaux. 86-93 [doi]
- Improved techniques for the identification of pseudogenesLachlan James M. Coin, Richard Durbin. 94-100 [doi]
- Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide dataMichiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano. 101-108 [doi]
- Functional inference from non-random distributions of conserved predicted transcription factor binding sitesChristoph Dieterich, Sven Rahmann, Martin Vingron. 109-115 [doi]
- Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model speciesHernán Dopazo, Javier Santoyo, Joaquín Dopazo. 116-121 [doi]
- Assigning transmembrane segments to helices in intermediate-resolution structuresAngela Enosh, Sarel J. Fleishman, Nir Ben-Tal, Dan Halperin. 122-129 [doi]
- SCOPEC: a database of protein catalytic domainsRichard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells. 130-136 [doi]
- High density linkage disequilibrium mapping using models of haplotype block variationGideon Greenspan, Dan Geiger. 137-144 [doi]
- The cell graphs of cancerCigdem Gunduz, Bülent Yener, S. Humayun Gultekin. 145-151 [doi]
- TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networksNaohiko Heida, Yoshikazu Hasegawa, Yoshiki Mochizuki, Katsura Hirosawa, Akihiko Konagaya, Tetsuro Toyoda. 152-160 [doi]
- Efficient approximations for learning phylogenetic HMM models from dataVladimir Jojic, Nebojsa Jojic, Christopher Meek, Dan Geiger, Adam C. Siepel, David Haussler, David Heckerman. 161-168 [doi]
- The Gene Ontology CategorizerCliff Joslyn, Susan M. Mniszewski, Andy W. Fulmer, Gary Heaton. 169-177 [doi]
- Filling gaps in a metabolic network using expression informationPeter Kharchenko, Dennis Vitkup, George M. Church. 178-185 [doi]
- Optimal robust non-unique probe selection using Integer Linear ProgrammingGunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert. 186-193 [doi]
- Finding disease specific alterations in the co-expression of genesDennis Kostka, Rainer Spang. 194-199 [doi]
- An efficient algorithm for detecting frequent subgraphs in biological networksMehmet Koyutürk, Ananth Grama, Wojciech Szpankowski. 200-207 [doi]
- Partial Cox regression analysis for high-dimensional microarray gene expression dataHongzhe Li, Jiang Gui. 208-215 [doi]
- A nucleotide substitution model with nearest-neighbour interactionsGerton Lunter, Jotun Hein. 216-223 [doi]
- Striped sheets and protein contact predictionRobert M. MacCallum. 224-231 [doi]
- Predicting genetic regulatory response using classificationManuel Middendorf, Anshul Kundaje, Chris Wiggins, Yoav Freund, Christina S. Leslie. 232-240 [doi]
- Protein names precisely peeled off free textSven Mika, Burkhard Rost. 241-247 [doi]
- Inferring quantitative models of regulatory networks from expression dataIftach Nachman, Aviv Regev, Nir Friedman. 248-256 [doi]
- HyBrow: a prototype system for computer-aided hypothesis evaluationStephen A. Racunas, N. H. Shah, I. Albert, Nina V. Fedoroff. 257-264 [doi]
- Reconstructing tumor amplisomesBenjamin J. Raphael, Pavel A. Pevzner. 265-273 [doi]
- Predicting protein-peptide interactions via a network-based motif samplerDavid J. Reiss, Benno Schwikowski. 274-282 [doi]
- Robust inference of groups in gene expression time-courses using mixtures of HMMsAlexander Schliep, Christine Steinhoff, Alexander Schönhuth. 283-289 [doi]
- Mining MEDLINE for implicit links between dietary substances and diseasesPadmini Srinivasan, Bisharah Libbus. 290-296 [doi]
- Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigensKellathur N. Srinivasan, Guanglan Zhang, Asif M. Khan, J. Thomas August, Vladimir Brusic. 297-302 [doi]
- Exploring Williams-Beuren syndrome using :::my:::GridRobert D. Stevens, Hannah J. Tipney, Chris Wroe, Thomas M. Oinn, Martin Senger, Phillip W. Lord, Carole A. Goble, Andy Brass, M. Tassabehji. 303-310 [doi]
- Tracking repeats using significance and transitivityRadek Szklarczyk, Jaap Heringa. 311-317 [doi]
- Genomic features in the breakpoint regions between syntenic blocksPhil Trinh, Aoife McLysaght, David Sankoff. 318-325 [doi]
- Learning kernels from biological networks by maximizing entropyKoji Tsuda, William Stafford Noble. 326-333 [doi]
- Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracyZasha Weinberg, Walter L. Ruzzo. 334-341 [doi]
- Filtering erroneous protein annotationDaniela Wieser, Ernst Kretschmann, Rolf Apweiler. 342-347 [doi]
- Reconstructing phylogeny by Quadratically Approximated Maximum LikelihoodM. D. Woodhams, Michael D. Hendy. 348-354 [doi]
- Using MoBIoS scalable genome join to find conserved primer pair candidates between two genomesWeijia Xu, Willard J. Briggs, Joanna Padolina, Ruth E. Timme, Wenguo Liu, C. Randal Linder, Daniel P. Miranker. 355-362 [doi]
- Protein network inference from multiple genomic data: a supervised approachYoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa. 363-370 [doi]
- A two-stage classifier for identification of protein-protein interface residuesChanghui Yan, Drena Dobbs, Vasant Honavar. 371-378 [doi]
- IMGT/JunctionAnalysis: the first tool for the analysis of the immunoglobulin and T cell receptor complex V-J and V-D-J JUNCTIONsMehdi Yousfi Monod, Véronique Giudicelli, Denys Chaume, Marie-Paule Lefranc. 379-385 [doi]
- Predicting protein folding pathwaysMohammed Javeed Zaki, Vinay Nadimpally, Deb Bardhan, Chris Bystroff. 386-393 [doi]