Gill Bejerano - researchr alias

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Viewing Publication 1 - 30 from 30

2025

Enriched phenotypes in rare variant carriers suggest pathogenic mechanisms in rare disease patientsLane Fitzsimmons, Maria T. Acosta, David R. Adams, Ben Afzali, Ali Al-Beshri, Eric Allenspach, Aimee Allworth, Raquel L. Alvarez, Justin Alvey, Ashley Andrews, Euan A. Ashley, Carlos A. Bacino, Guney Bademci, Ashok Balasubramanyam, Dustin Baldridge, Erin Baldwin, Jim Bale, Michael Bamshad, Deborah Barbouth, Pinar Bayrak-Toydemir, Anita Beck, Alan H. Beggs, Edward Behrens, Gill Bejerano, Hugo J. Bellen, Jimmy Bennett, Jonathan A. Bernstein, Gerard T. Berry, Anna Bican, Stephanie Bivona, Elizabeth Blue, John Bohnsack, Devon Bonner, Nicholas Borja, Lorenzo Botto, Lauren C. Briere, Elizabeth A. Burke, Lindsay C. Burrage, Manish J. Butte, Peter Byers, William E. Byrd, Kaitlin Callaway, John Carey, George Carvalho, Thomas Cassini, Sirisak Chanprasert, Hsiao-Tuan Chao, Ivan Chinn, Gary D. Clark, Terra R. Coakley, Laurel A. Cobban, Joy D. Cogan, Matthew Coggins, F. Sessions Cole, Brian Corner, Rosario I. Corona, William J. Craigen, Andrew B. Crouse, Vishnu Cuddapah, Precilla D'souza, Hongzheng Dai, Kahlen Darr, Surendra Dasari, Joie Davis, Margaret Delgado, Esteban C. Dell'angelica, Katrina Dipple, Daniel Doherty, Naghmeh Dorrani, Jessica Douglas, Emilie D. Douine, Dawn Earl, Lisa T. Emrick, Christine M. Eng, Cecilia Esteves, Kimberly Ezell, Elizabeth L. Fieg, Paul G. Fisher, Brent L. Fogel, Jiayu Fu, William A. Gahl, Rebecca Ganetzky, Emily Glanton, Ian Glass, Page C. Goddard, Joanna M. Gonzalez, Andrea Gropman, Meghan Halley, Rizwan Hamid, Neal Hanchard, Kelly Hassey, Nichole Hayes, Frances High, Anne Hing, Fuki M. Hisama, Ingrid A. Holm, Jason Hom, Martha Horike-Pyne, Alden Huang, Yan Huang, Anna Hurst, Wendy Introne, Gail P. Jarvik, Suman Jayadev, Jean-Marie Orpa, Vaidehi Jobanputra, Oguz Kanca, Yigit Karasozen, Shamika Ketkar, Dana Kiley, Gonench Kilich, Eric W. Klee, Shilpa N. Kobren, Isaac S. Kohane, Jennefer N. Kohler, Bruce Korf, Susan Korrick, Deborah Krakow, Elijah Kravets, Seema R. Lalani, Christina Lam, Brendan C. Lanpher, Ian R. Lanza, Kumarie Latchman, Kimberly Leblanc, Brendan H. Lee, Kathleen A. Leppig, Richard A. Lewis, Pengfei Liu, Nicola Longo, Joseph Loscalzo, Richard L. Maas, Ellen F. Macnamara, Calum A. MacRae, Valerie V. Maduro, Audreystephannie Maghiro, Rachel Mahoney, May Christine V. Malicdan, Rong Mao, Ronit Marom, Gabor Marth, Beth A. Martin, Martín G. Martín, Julian A. Martínez-Agosto, Shruti Marwaha, Allyn McConkie-Rosell, Ashley McMinn, Matthew Might, Mohamad Mikati, Danny Miller, Ghayda Mirzaa, Breanna Mitchell, Paolo Moretti, Marie Morimoto, John J. Mulvihill, Lindsay Mulvihill, Mariko Nakano-Okuno, Stanley F. Nelson, Serena Neumann, Dargie Nitsuh, Donna Novacic, Devin Oglesbee, James P. Orengo, Laura Pace, Stephen Pak, J. Carl Pallais, Neil H. Parker, Léshon Peart, Leoyklang Petcharet, John A. Phillips, Filippo Pinto e Vairo, Jennifer E. Posey, Lorraine Potocki, Barbara N. Pusey Swerdzewski, Aaron R. Quinlan, Daniel J. Rader, Ramakrishnan Rajagopalan, Deepak A. Rao, Anna Raper, Wendy Raskind, Adriana Rebelo, Chloe M. Reuter, Lynette Rives, Lance H. Rodan, Martín-Rodríguez, Jill A. Rosenfeld, Elizabeth Rosenthal, Francis Rossignol, Maura Ruzhnikov, Marla Sabaii, Jacinda B. Sampson, Timothy Schedl, Lisa Schimmenti, Kelly Schoch, Daryl A. Scott, Elaine Seto, Vandana Shashi, Emily Shelkowitz, Sam Sheppeard, Jimann Shin, Edwin K. Silverman, Giorgio Sirugo, Kathy Sisco, Tammi Skelton, Cara Skraban, Carson A. Smith, Kevin S. Smith, Lilianna Solnica-Krezel, Ben Solomon, Rebecca C. Spillmann, Andrew Stergachis, Joan M. Stoler, Kathleen Sullivan, Shamil R. Sunyaev, Shirley Sutton, David A. Sweetser, Virginia Sybert, Holly K. Tabor, Queenie Tan, Arjun Tarakad, Herman Taylor, Mustafa Tekin, Willa Thorson, Cynthia J. Tifft, Camilo Toro, Alyssa A. Tran, Rachel A. Ungar, Adeline Vanderver, Matt Velinder, Dave Viskochil, Tiphanie P. Vogel, Colleen E. Wahl, Melissa Walker, Nicole M. Walley, Jennifer Wambach, Michael F. Wangler, Patricia A. Ward, Daniel Wegner, Monika Weisz Hubshman, Mark Wener, Tara Wenger, Monte Westerfield, Matthew T. Wheeler, Jordan H. Whitlock, Lynne A. Wolfe, Heidi Wood, Kim Worley, Shinya Yamamoto, Zhe Zhang, Stephan Züchner, Brett K. Beaulieu-Jones, Shilpa Nadimpalli Kobren. biodatamining, 18(1), 2025. [doi]

2022

WhichTF is functionally important in your open chromatin data?Yosuke Tanigawa, Ethan Dyer, Gill Bejerano. ploscb, 18(8), 2022. [doi]

2021

Avoiding genetic racial profiling in criminal DNA profile databasesJacob A. Blindenbach, Karthik Anand Jagadeesh, Gill Bejerano, David J. Wu 0001. ncs, 1(4):272-279, 2021. [doi]

2019

Darwin: A Genomics CoprocessorYatish Turakhia, Gill Bejerano, William J. Dally. micro, 39(3):29-37, 2019. [doi]

Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read AssemblyYatish Turakhia, Gill Bejerano, William J. Dally. usenix 2019: [doi]

Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High SpeedupYatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally. hpca 2019: 359-372 [doi]

2018

Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read AssemblyYatish Turakhia, Gill Bejerano, William J. Dally. asplos 2018: 199-213 [doi]

2016

Erosion of Conserved Binding Sites in Personal Genomes Points to Medical HistoriesHarendra Guturu, Sandeep Chinchali, Shoa L. Clarke, Gill Bejerano. ploscb, 12(2), 2016. [doi]

2014

Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function DataGeetu Tuteja, Karen Betancourt Moreira, Tisha Chung, Jenny Chen, Aaron M. Wenger, Gill Bejerano. ploscb, 10(1), 2014. [doi]

2007

2006

Branch and bound computation of exact ::::p::::-valuesGill Bejerano. bioinformatics, 22(17):2158-2159, 2006. [doi]

Identification and Classification of Conserved RNA Secondary Structures in the Human GenomeJakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler. ploscb, 2(4), 2006. [doi]

2004

Algorithms for variable length Markov chain modelingGill Bejerano. bioinformatics, 20(5):788-789, 2004. [doi]

Into the heart of darkness: large-scale clustering of human non-coding DNAGill Bejerano, David Haussler, Mathieu Blanchette. ismb 2004: 40-48 [doi]

Efficient Exact p-Value Computation for Small Sample, Sparse, and Surprising Categorical DataGill Bejerano, Nir Friedman, Naftali Tishby. jcb, 11(5):867-886, 2004. [doi]

2003

2002

Discriminative Feature Selection via Multiclass Variable Memory Markov ModelNoam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby. icml 2002: 578-585

2001

A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding SitesYoseph Barash, Gill Bejerano, Nir Friedman. wabi 2001: 278-293 [doi]

Markovian domain fingerprinting: statistical segmentation of protein sequencesGill Bejerano, Yevgeny Seldin, Hanah Margalit, Naftali Tishby. bioinformatics, 17(10):927-934, 2001.

Variations on probabilistic suffix trees: statistical modeling and prediction of protein familiesGill Bejerano, Golan Yona. bioinformatics, 17(1):23-43, 2001.

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sitesRuti Hershberg, Gill Bejerano, Alberto Santos-Zavaleta, Hanah Margalit. nar, 29(1):277, 2001.

Automatic Modeling of Musical StyleOlivier Lartillot, Shlomo Dubnov, Gérard Assayag, Gill Bejerano. icmc 2001: [doi]

Unsupervised Sequence Segmentation by a Mixture of Switching Variable Memory Markov SourcesYevgeny Seldin, Gill Bejerano, Naftali Tishby. icml 2001: 513-520

2000

Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and spaceAlberto Apostolico, Gill Bejerano. recomb 2000: 25-32 [doi]

Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and SpaceAlberto Apostolico, Gill Bejerano. jcb, 7(3-4):381-393, 2000.

1999

Modeling protein families using probabilistic suffix treesGill Bejerano, Golan Yona. recomb 1999: 15-24 [doi]

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2025

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1999

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