Abstract is missing.
- A combinatorial approach to protein docking with flexible side-chainsErnst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller. 15-24 [doi]
- Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and spaceAlberto Apostolico, Gill Bejerano. 25-32 [doi]
- The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR dataChristopher Bailey-Kellogg, Alik Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce Randall Donald. 33-44 [doi]
- Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract)Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander. 45 [doi]
- Human and mouse gene structure: comparative analysis and application to exon predictionSerafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander. 46-53 [doi]
- Tissue classification with gene expression profilesAmir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini. 54-64 [doi]
- Universal DNA tag systems: a combinatorial design schemeAmir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini. 65-75 [doi]
- Comprehensive statistical method for protein fold recognitionJadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith. 76-85 [doi]
- An analytic approach to significance assessment in local sequence alignment with gapsRalf Bundschuh. 86-95 [doi]
- Notung: dating gene duplications using gene family treesKevin Chen, Dannie Durand, Martin Farach-Colton. 96-106 [doi]
- A compression algorithm for DNA sequences and its applications in genome comparisonXin Chen, Sam Kwong, Ming Li. 107 [doi]
- Multiple maxima of likelihood in phylogenetic trees: an analytic approachBenny Chor, Michael D. Hendy, Barbara R. Holland, David Penny. 108-117 [doi]
- Tree fitting: an algebraic approach using profile distancesRichard Desper, Martin Vingron. 119-126 [doi]
- Using Bayesian networks to analyze expression dataNir Friedman, Michal Linial, Iftach Nachman, Dana Pe er. 127-135 [doi]
- Invited presentation: introns and modules in ancient conserved genes (abstract only)Walter Gilbert. 136 [doi]
- Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only)Takashi Gojobori, T. Daniel Andrews, Takeshi Itoh. 137 [doi]
- New algorithms for the duplication-loss modelMichael T. Hallett, Jens Lagergren. 138-146 [doi]
- Contig selection in physical mappingSteffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron. 155-164 [doi]
- A data-analysis pipeline for large-scale gene expression analysisSteffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach. 165-173 [doi]
- Computing life and global technologies (abstract only)Leroy E. Hood. 174 [doi]
- DNA sequence variation among humans and apes (abstract only)Henrik Kaessmann, Ingo Ebersberger, Victor Wiebe, Rikard Erlandsson, Jim F. Wilson, Carsten Schwarz, Michaela Winkler, Svante Pääbo. 175 [doi]
- Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only)Minoru Kanehisa. 176 [doi]
- Optimizing for success: a new score function for distantly related protein sequence comparisonMaricel Kann, Richard A. Goldstein. 177-182 [doi]
- Reconstructing distances in physical maps of chromosomes with nonoverlapping probesJohn D. Kececioglu, Sanjay Shete, Jonathan Arnold. 183-192 [doi]
- UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody termsAdam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga. 193-200 [doi]
- Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identificationLaurent Marsan, Marie-France Sagot. 210-219 [doi]
- Molecular diversity: strategies and concerns (abstract only)Yvonne C. Martin, Mark G. Bures. 220 [doi]
- Human genome analysis and medicine in the 21st century (abstract only)Yusuke Nakamura. 221-222 [doi]
- Determining contact energy function for continuous state models of globular protein conformationsY. Zenmei Ohkubo, Gordon M. Crippen. 223-230 [doi]
- Mutation-tolerant protein identification by mass-spectrometryPavel A. Pevzner, Vlado Dancík, Chris L. Tang. 231-236 [doi]
- Probabilities for having a new fold on the basis of a map of all protein sequencesElon Portugaly, Michal Linial. 237-244 [doi]
- Sequencing-by-hybridization at the information-theory bound: an optimal algorithmFranco P. Preparata, Eli Upfal. 245-253 [doi]
- Early eukaryote evolution based on mitochondrial gene order breakpointsDavid Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger. 254-262 [doi]
- Class prediction and discovery using gene expression dataDonna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander. 263-272 [doi]
- Matching simulation and experiment (extended abstract): a new simplified model for simulating protein foldingJon M. Sorenson, Teresa Head-Gordon. 273-282 [doi]
- PDB_ISL: an intermediate sequence library for protein structure assignmentSarah A. Teichmann, Cyrus Chothia, George M. Church, Jong Park. 283-289 [doi]
- The E-CELL project: towards integrative simulation of cellular processesMasaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Yusuke Saito, S. Shimizu, Yoichi Nakayama. 290-298 [doi]
- Protein structure determination using protein threading and sparse NMR data (extended abstract)Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu. 299-307 [doi]
- A unified sequence-structure classification of protein sequences: combining sequence and structure in a map of the protein spaceGolan Yona, Michael Levitt. 308-317 [doi]