Amit G. Deshwar - researchr alias

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Viewing Publication 1 - 8 from 8

2020

The evolutionary history of 2,658 cancersMoritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff Macintyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung-Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo. nature, 578(7793):122-128, 2020. [doi]

2018

COSSMO: predicting competitive alternative splice site selection using deep learningHannes Bretschneider, Shreshth Gandhi, Amit G. Deshwar, Khalid Zuberi, Brendan J. Frey. bioinformatics, 34(13), 2018. [doi]

Reconstructing evolutionary trajectories of mutations in cancerYulia Rubanova, Ruian Shi, Roujia Li, Jeff Wintersinger, Amit G. Deshwar, Nil Sahin, Quaid Morris. iclr 2018: [doi]

2015

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profilesCatalina Anghel, Gerald Quon, Syed Haider, Francis Nguyen, Amit G. Deshwar, Quaid Morris, Paul C. Boutros. bmcbi, 16:156, 2015. [doi]

Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of TumorsAmit G. Deshwar, Shankar Vembu, Quaid Morris. psb 2015: 20-31 [doi]

2014

PLIDA: cross-platform gene expression normalization using perturbed topic modelsAmit G. Deshwar, Quaid Morris. bioinformatics, 30(7):956-961, 2014. [doi]

Inferring clonal evolution of tumors from single nucleotide somatic mutationsWei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris. bmcbi, 15:35, 2014. [doi]

2011

Computational purification of tumor gene expression dataAmit G. Deshwar, Gerald Quon, Quaid Morris. bmcbi, 12(S-11), 2011. [doi]

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