Anatoly M. Ruvinsky - researchr alias

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Viewing Publication 1 - 8 from 8

2017

Deciphering Cryptic Binding Sites on Proteins by Mixed-Solvent Molecular DynamicsS. Roy Kimura, Hai Peng Hu, Anatoly M. Ruvinsky, Woody Sherman, Angelo D. Favia. jcisd, 57(6):1388-1401, June 2017. [doi]

2015

Simulated unbound structures for benchmarking of protein docking in the Dockground resourceTatsiana Kirys, Anatoly M. Ruvinsky, Deepak Singla, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser. bmcbi, 16:243, 2015. [doi]

2012

Correlation analysis of the side-chains conformational distribution in bound and unbound proteinsTatsiana Kirys, Anatoly M. Ruvinsky, Alexander V. Tuzikov, Ilya A. Vakser. bmcbi, 13:236, 2012. [doi]

Structure fluctuations and conformational Changes in protein bindingAnatoly M. Ruvinsky, Tatsiana Kirys, Alexander V. Tuzikov, Ilya A. Vakser. jbcb, 10(2), 2012. [doi]

2009

The ruggedness of protein-protein energy landscape and the cutoff for 1/::::r:::::::::::n::::::: potentialsAnatoly M. Ruvinsky, Ilya A. Vakser. bioinformatics, 25(9):1132-1136, 2009. [doi]

2007

Role of binding entropy in the refinement of protein-ligand docking predictions: Analysis based on the use of 11 scoring functionsAnatoly M. Ruvinsky. jcc, 28(8):1364-1372, 2007. [doi]

Calculations of protein-ligand binding entropy of relative and overall molecular motionsAnatoly M. Ruvinsky. jcamd, 21(7):361-370, 2007. [doi]

2005

New and fast statistical-thermodynamic method for computation of protein-ligand binding entropy substantially improves docking accuracyAnatoly M. Ruvinsky, A. V. Kozintsev. jcc, 26(11):1089-1095, 2005. [doi]

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