Andrei L. Lomize - researchr alias

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Viewing Publication 1 - 12 from 12

2023

Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold MultimerIrina D. Pogozheva, Stanislav Cherepanov, Sang-Jun Park, Malini Raghavan, Wonpil Im, Andrei L. Lomize. jcisd, 63(18):5874-5895, September 2023. [doi]

2022

Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal MembranesIrina D. Pogozheva, Grant A. Armstrong, Lingyang Kong, Timothy J. Hartnagel, Carly A. Carpino, Stephen E. Gee, Danielle M. Picarello, Amanda S. Rubin, Jumin Lee, Soohyung Park, Andrei L. Lomize, Wonpil Im. jcisd, 62(4):1036-1051, 2022. [doi]

2021

Thermodynamics-Based Molecular Modeling of α-Helices in Membranes and MicellesAndrei L. Lomize, Kevin Schnitzer, Spencer C. Todd, Irina D. Pogozheva. jcisd, 61(6):2884-2896, 2021. [doi]

2019

Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive MoleculesAndrei L. Lomize, Irina D. Pogozheva. jcisd, 59(7):3198-3213, 2019. [doi]

PerMM: A Web Tool and Database for Analysis of Passive Membrane Permeability and Translocation Pathways of Bioactive MoleculesAndrei L. Lomize, Jacob M. Hage, Kevin Schnitzer, Konstantin Golobokov, Mitchell B. Lafaive, Alexander C. Forsyth, Irina D. Pogozheva. jcisd, 59(7):3094-3099, 2019. [doi]

2018

Membranome 2.0: database for proteome-wide profiling of bitopic proteins and their dimersAndrei L. Lomize, Jacob M. Hage, Irina D. Pogozheva. bioinformatics, 34(6):1061-1062, 2018. [doi]

2017

Membranome: a database for proteome-wide analysis of single-pass membrane proteinsAndrei L. Lomize, Mikhail A. Lomize, Shean R. Krolicki, Irina D. Pogozheva. nar, 45(Database-Issue), 2017. [doi]

2012

OPM database and PPM web server: resources for positioning of proteins in membranesMikhail A. Lomize, Irina D. Pogozheva, Hyeon Joo, Henry I. Mosberg, Andrei L. Lomize. nar, 40(Database-Issue):370-376, 2012. [doi]

2011

Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in MembranesAndrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg. jcisd, 51(4):930-946, 2011. [doi]

Anisotropic Solvent Model of the Lipid Bilayer. 1. Parameterization of Long-Range Electrostatics and First Solvation Shell EffectsAndrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg. jcisd, 51(4):918-929, 2011. [doi]

2006

OPM: Orientations of Proteins in Membranes databaseMikhail A. Lomize, Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg. bioinformatics, 22(5):623-625, 2006. [doi]

1999

Structural organization of G-protein-coupled receptorsAndrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg. jcamd, 13(4):325-353, 1999. [doi]

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