Ioannis P. Androulakis - researchr alias

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Viewing Publication 1 - 31 from 31

2023

HPA axis differential flatness and Liouvillian study for higher resiliency investigationsFlorentina Nicolau, Hugues Mounier, Ioannis P. Androulakis. imamci, 40(4):746-788, December 2023. [doi]

2019

The quest for digital health: From diseases to patientsIoannis P. Androulakis. cce, 127:247-253, 2019. [doi]

The Impact of Stochasticity and Its Control on a Model of the Inflammatory ResponsePanteleimon D. Mavroudis, Jeremy D. Scheff, John C. Doyle, Yoram Vodovotz, Ioannis P. Androulakis. computation, 7(1):3, 2019. [doi]

2017

On the analysis of complex biological supply chains: From process systems engineering to quantitative systems pharmacologyRohit T. Rao, Megerle L. Scherholz, Clara Hartmanshenn, Seul-A. Bae, Ioannis P. Androulakis. cce, 107:100-110, 2017. [doi]

2014

A chemical engineer's perspective on health and diseaseIoannis P. Androulakis. cce, 71:665-671, 2014. [doi]

Biosystems modeling and engineeringAndreas A. Linninger, Ioannis P. Androulakis. cce, 71:663-664, 2014. [doi]

Bioinformatics analysis of transcriptional regulation of circadian genes in rat liverTung T. Nguyen, John S. A. Mattick, Qian Yang, Mehmet A. Orman, Marianthi G. Ierapetritou, Francois Berthiaume, Ioannis P. Androulakis. bmcbi, 15:83, 2014. [doi]

2013

A multiscale modeling approach to inflammation: A case study in human endotoxemiaJeremy D. Scheff, Panteleimon D. Mavroudis, Panagiota T. Foteinou, Gary An, Steve E. Calvano, John Doyle, Thomas E. Dick, Stephen F. Lowry, Yoram Vodovotz, Ioannis P. Androulakis. jcphy, 244:279-289, 2013. [doi]

2011

Model building using bi-level optimizationGeorges K. Saharidis, Ioannis P. Androulakis, Marianthi G. Ierapetritou. jgo, 49(1):49-67, 2011. [doi]

Pulsatile Glucocorticoid Secretion: Origins and Downstream EffectsJeremy D. Scheff, Alyssa K. Kosmides, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis. tbe, 58(12):3504-3507, 2011. [doi]

2010

Effects of Triadimefon on the Metabolism of Cultured HepatocytesVidya V. Iyer, Ioannis P. Androulakis, Charles M. Roth, Marianthi G. Ierapetritou. bibe 2010: 118-123 [doi]

Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structuresTung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis. bmcbi, 11:515, 2010. [doi]

Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liverTung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis. bmcbi, 11:279, 2010. [doi]

Dynamic Complexity of the Temporal Transcriptional Regulation Program in Human EndotoxemiaTung T. Nguyen, Panagiota T. Foteinou, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry. bibe 2010: 112-117 [doi]

Circadian signatures in rat liver: from gene expression to pathwaysMeric A. Ovacik, Siddharth Sukumaran, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis. bmcbi, 11:540, 2010. [doi]

Modeling Circadian Rhythms in InflammationJeremy D. Scheff, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry. bibe 2010: 197-202 [doi]

2009

2008

A novel MINLP-based representation of the original complex model for predicting gasoline emissionsKevin C. Furman, Ioannis P. Androulakis. cce, 32(12):2857-2876, 2008. [doi]

Informative gene selection and design of regulatory networks using integer optimizationEric Yang, Timothy Maguire, Martin L. Yarmush, Ioannis P. Androulakis. cce, 32(4-5):633-649, 2008. [doi]

2007

A novel non-overlapping bi-clustering algorithm for network generation using living cell array dataEric Yang, P. T. Foteinou, K. R. King, Martin L. Yarmush, Ioannis P. Androulakis. bioinformatics, 23(17):2306-2313, 2007. [doi]

Bioinformatics analysis of the early inflammatory response in a rat thermal injury modelEric Yang, Timothy Maguire, Martin L. Yarmush, Francois Berthiaume, Ioannis P. Androulakis. bmcbi, 8, 2007. [doi]

2006

New approaches for representing, analyzing and visualizing complex kinetic transformationsIoannis P. Androulakis. cce, 31(1):41-50, 2006. [doi]

Assessing the Information Content of Short Time Series Expression DataEric H. Yang, Ioannis P. Androulakis. embc 2006: 5535-5538 [doi]

2005

Selecting maximally informative genesIoannis P. Androulakis. cce, 29(3):535-546, 2005. [doi]

2004

Store and retrieve representations of dynamic systems motivated by studies in gas phase chemical kineticsIoannis P. Androulakis. cce, 28(11):2141-2155, 2004. [doi]

1997

Prediction of Oligopeptide Conformations via Deterministic Global OptimizationIoannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas. jgo, 11(1):1-34, 1997. [doi]

1995

αBB: A global optimization method for general constrained nonconvex problemsIoannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas. jgo, 7(4):337-363, 1995. [doi]

A deterministic global optimization approach for the protein folding problemCostas D. Maranas, Ioannis P. Androulakis, Christodoulos A. Floudas. dimacs 1996: 133-150

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