Irina S. Moreira - researchr alias

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Viewing Publication 1 - 14 from 14

2023

DELFOS - drug efficacy leveraging forked and specialized networks - benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivityLuiz Felipe Piochi, António J. Preto, Irina S. Moreira. bioinformatics, 39(10), October 2023. [doi]

2022

DrugTax: package for drug taxonomy identification and explainable feature extractionAntónio J. Preto, Paulo C. Correia, Irina S. Moreira. jcheminf, 14(1):73, 2022. [doi]

2021

MENSAdb: a thorough structural analysis of membrane protein dimersPedro Matos-Filipe, António J. Preto, Panagiotis I. Koukos, Joana Mourão, Alexandre M. J. J. Bonvin, Irina S. Moreira. biodb, 2021, 2021. [doi]

Predicting Hot Spots Using a Deep Neural Network ApproachAntónio J. Preto, Pedro Matos-Filipe, José G. de Almeida, Joana Mourão, Irina S. Moreira. In Hugh M. Cartwright, editor, Artificial Neural Networks - Third Edition. Volume 2190 of Methods in Molecular Biology, pages 267-288, Springer, 2021. [doi]

SicknessMiner: a deep-learning-driven text-mining tool to abridge disease-disease associationsNícia Rosário-Ferreira, Victor Guimarães 0003, Vítor Santos Costa, Irina S. Moreira. bmcbi, 22(1):482, 2021. [doi]

2020

Understanding the Binding Specificity of G-Protein Coupled Receptors toward G-Proteins and Arrestins: Application to the Dopamine Receptor FamilyAntónio J. Preto, Carlos A. V. Barreto, Salete J. Baptista, José G. de Almeida, Agostinho Lemos, André Melo, M. Natália D. S. Cordeiro, Zeynep Kurkcuoglu, Rita Melo, Irina S. Moreira. jcisd, 60(8):3969-3984, 2020. [doi]

2018

Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2Zeynep Kurkcuoglu, Panagiotis I. Koukos, Nevia Citro, Mikael E. Trellet, João P. G. L. M. Rodrigues, Irina S. Moreira, Jorge Roel-Touris, Adrien S. J. Melquiond, Cunliang Geng, Jörg Schaarschmidt, Li C. Xue, Anna Vangone, Alexandre M. J. J. Bonvin. jcamd, 32(1):175-185, 2018. [doi]

2015

Solvent Accessible Surface Area-Based Hot-Spot Detection Methods for Protein-Protein and Protein-Nucleic Acid InterfacesCristian R. Munteanu, António César Pimenta, Carlos Fernandez-Lozano, André Melo, M. N. D. S. Cordeiro, Irina S. Moreira. jcisd, 55(5):1077-1086, 2015. [doi]

2014

Dynamic Structure of NGF and proNGF Complexed with p75NTR: Pro-Peptide EffectA. César Pimenta, Daniel F. A. R. Dourado, João M. Martins, André Melo, M. N. Dias Soeiro Cordeiro, Ramiro D. Almeida, Giulia Morra, Irina S. Moreira. jcisd, 54(7):2051-2067, 2014. [doi]

2013

Ligand-Induced Structural Changes in TEM-1 Probed by Molecular Dynamics and Relative Binding Free Energy CalculationsA. César Pimenta, João M. Martins, Ruben Fernandes, Irina S. Moreira. jcisd, 53(10):2648-2658, 2013. [doi]

Extending the applicability of the O-ring theory to protein-DNA complexesR. M. Ramos, L. F. Fernandes, Irina S. Moreira. CANDC, 44:31-39, 2013. [doi]

2010

Protein-protein docking dealing with the unknownIrina S. Moreira, Pedro Alexandrino Fernandes, Maria JoÃ£o Ramos. jcc, 31(2):317-342, 2010. [doi]

2007

Computational alanine scanning mutagenesis - An improved methodological approachIrina S. Moreira, Pedro Alexandrino Fernandes, Maria João Ramos. jcc, 28(3):644-654, 2007. [doi]

2003

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