Jeremy K. Nicholson - researchr alias

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Viewing Publication 1 - 10 from 10

2021

Strategy for improved characterization of human metabolic phenotypes using a COmbined Multi-block Principal components Analysis with Statistical Spectroscopy (COMPASS)Ruey Leng Loo, Queenie Chan, Henrik Antti, Jia V. Li, H. Ashrafian, Paul Elliott, Jeremiah Stamler, Jeremy K. Nicholson, Elaine Holmes, Julien Wist. bioinformatics, 36(21):5229-5236, 2021. [doi]

2019

SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging dataPaolo Inglese, Gonçalo Correia, Zoltan Takats, Jeremy K. Nicholson, Robert C. Glen. bioinformatics, 35(1):178-180, 2019. [doi]

pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectraAndrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Nikita Harvey, Beatriz Jiménez, Kazuhiro Sonomura, Taka-Aki Sato, Fumihiko Matsuda, Pierre A. Zalloua, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas. bioinformatics, 35(11):1916-1922, 2019. [doi]

The nPYc-Toolbox, a Python module for the pre-processing, quality-control and analysis of metabolic profiling datasetsCaroline J. Sands, Arnaud M. Wolfer, Gonçalo D. S. Correia, Noureddin Sadawi, Arfan Ahmed, Beatriz Jiménez, Matthew R. Lewis, Robert C. Glen, Jeremy K. Nicholson, Jake T. M. Pearce. bioinformatics, 35(24):5359-5360, 2019. [doi]

2018

MWASTools: an R/bioconductor package for metabolome-wide association studiesAndrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana L. Neves, Maryam Anwar, Enrico Petretto, Costanza Emanueli, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas. bioinformatics, 34(5):890-892, 2018. [doi]

2017

MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathwaysAndrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas. bioinformatics, 33(5):773-775, 2017. [doi]

2014

MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGGJoram M. Posma, Steven L. Robinette, Elaine Holmes, Jeremy K. Nicholson. bioinformatics, 30(6):893-895, 2014. [doi]

2009

Genetic algorithms for simultaneous variable and sample selection in metabonomicsRachel Cavill, Hector C. Keun, Elaine Holmes, John C. Lindon, Jeremy K. Nicholson, Timothy M. D. Ebbels. bioinformatics, 25(1):112-118, 2009. [doi]

2008

K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature spaceMax Bylesjö, Mattias Rantalainen, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg. bmcbi, 9, 2008. [doi]

Piecewise multivariate modelling of sequential metabolic profiling dataMattias Rantalainen, Olivier Cloarec, Timothy M. D. Ebbels, Torbjörn Lundstedt, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg. bmcbi, 9, 2008. [doi]

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