John B. Hogenesch - researchr alias

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Viewing Publication 1 - 10 from 10

2022

in silico genome-wide screen for circadian clock strength in human samplesGang Wu, Marc D. Ruben, Lauren J. Francey, Yin Yeng Lee, Ron C. Anafi, John B. Hogenesch. bioinformatics, 38(24):5375-5382, December 2022. [doi]

2021

Normalized coefficient of variation (nCV): a method to evaluate circadian clock robustness in population scale dataGang Wu, Lauren J. Francey, Marc D. Ruben, John B. Hogenesch. bioinformatics, 37(23):4581-4583, 2021. [doi]

2016

MetaCycle: an integrated R package to evaluate periodicity in large scale dataGang Wu, Ron C. Anafi, Michael Hughes, Karl Kornacker, John B. Hogenesch. bioinformatics, 32(21):3351-3353, 2016. [doi]

2015

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq dataKatharina E. Hayer, Angel D. Pizarro, Nicholas F. Lahens, John B. Hogenesch, Gregory R. Grant. bioinformatics, 31(24):3938-3945, 2015. [doi]

2013

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological dataAnastasia Deckard, Ron C. Anafi, John B. Hogenesch, Steven B. Haase, John Harer. bioinformatics, 29(24):3174-3180, 2013. [doi]

CircaDB: a database of mammalian circadian gene expression profilesAngel D. Pizarro, Katharina Hayer, Nicholas F. Lahens, John B. Hogenesch. nar, 41(Database-Issue):1009-1013, 2013. [doi]

2011

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)Gregory R. Grant, Michael H. Farkas, Angel D. Pizarro, Nicholas F. Lahens, Jonathan Schug, Brian P. Brunk, Christian J. Stoeckert Jr., John B. Hogenesch, Eric A. Pierce. bioinformatics, 27(18):2518-2528, 2011. [doi]

2010

The Gene Wiki: community intelligence applied to human gene annotationJon W. Huss III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel Pizarro, Faramarz Valafar, John B. Hogenesch, Andrew I. Su. nar, 38(Database-Issue):633-639, 2010. [doi]

2008

WAVECLOCK: wavelet analysis of circadian oscillationTom S. Price, Julie E. Baggs, Anne M. Curtis, Garret A. FitzGerald, John B. Hogenesch. bioinformatics, 24(23):2794-2795, 2008. [doi]

NetAtlas: A Cytoscape Plugin to Examine Signaling Networks Based on Tissue Gene ExpressionLonglong Yang, John R. Walker, John B. Hogenesch, Russell S. Thomas. isb, 8(1):47-52, 2008. [doi]

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