John D. Holliday - researchr alias

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Viewing Publication 1 - 34 from 34

2015

Maximum Common Substructure-Based Data Fusion in Similarity SearchingEdmund Duesbury, John D. Holliday, Peter Willett 0002. jcisd, 55(2):222-230, 2015. [doi]

Calculation of Substructural Analysis Weights Using a Genetic AlgorithmJohn D. Holliday, Nor Sani, Peter Willett 0002. jcisd, 55(2):214-221, 2015. [doi]

2014

The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislationPedro Franco, Nuria Porta, John D. Holliday, Peter Willett 0002. jcheminf, 6(1):5, 2014. [doi]

2013

Comparison of chemical similarity measures using different numbers of query structuresShereena M. Arif, John D. Holliday, Peter Willett 0002. jis, 39(1):7-14, 2013. [doi]

2012

Interactions Between Weighting Scheme and Similarity Coefficient in Similarity-Based Virtual ScreeningJohn D. Holliday, Peter Willett 0002, Hua Xiang. ijcce, 2(2):28-41, 2012. [doi]

Similarity Coefficients for Binary Chemoinformatics Data: Overview and Extended Comparison Using Simulated and Real Data SetsRoberto Todeschini, Viviana Consonni, Hua Xiang, John D. Holliday, Massimo Buscema, Peter Willett 0002. jcisd, 52(11):2884-2901, 2012. [doi]

2011

Representation and Searching of Chemical-Structure Information in PatentsJohn D. Holliday, Peter Willett 0002. In Mihai Lupu, Katja Mayer, John Tait, Anthony J. Trippe, editors, Current Challenges in Patent Information Retrieval. Volume 29 of The Information Retrieval Series, pages 343-355, Springer, 2011. [doi]

Multiple search methods for similarity-based virtual screening: analysis of search overlap and precisionJohn D. Holliday, Evangelos Kanoulas, Nurul Malim, Peter Willett 0002. jcheminf, 3:29, 2011. [doi]

2010

Inverse Frequency Weighting of Fragments for Similarity-Based Virtual ScreeningShereena M. Arif, John D. Holliday, Peter Willett 0002. jcisd, 50(8):1340-1349, 2010. [doi]

2009

Analysis and use of fragment-occurrence data in similarity-based virtual screeningShereena M. Arif, John D. Holliday, Peter Willett 0002. jcamd, 23(9):655-668, 2009. [doi]

Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of OccurrenceShereena M. Arif, JÃ©rÃ´me Hert, John D. Holliday, Nurul Malim, Peter Willett 0002. prib 2009: 404-414 [doi]

Effect of Data Standardization on Chemical Clustering and Similarity SearchingChia-Wei Chu, John D. Holliday, Peter Willett 0002. jcisd, 49(2):155-161, 2009. [doi]

Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performanceEleanor J. Gardiner, Valerie J. Gillet, Maciej Haranczyk, JÃ©rÃ´me Hert, John D. Holliday, Nurul Malim, Yogendra Patel, Peter Willett 0002. sadm, 2(2):103-114, 2009. [doi]

Comparison of Nonbinary Similarity Coefficients for Similarity Searching, Clustering and Compound SelectionAysha Al Khalifa, Maciej Haranczyk, John D. Holliday. jcisd, 49(5):1193-1201, 2009. [doi]

2008

Structure and singly occupied molecular orbital analysis of anionic tautomers of guanineMaciej Haranczyk, John D. Holliday, Peter Willett 0002, Maciej Gutowski. jcc, 29(8):1277-1291, 2008. [doi]

Comparison of Similarity Coefficients for Clustering and Compound SelectionMaciej Haranczyk, John D. Holliday. jcisd, 48(3):498-508, 2008. [doi]

2004

Clustering Files of Chemical Structures Using the Fuzzy ::::k::::-Means Clustering MethodJohn D. Holliday, Sarah L. Rodgers, Peter Willett 0002, Min-You Chen, Mahdi Mahfouf, Kevin Lawson, Graham Mullier. jcisd, 44(3):894-902, 2004. [doi]

2003

1996

The Sheffield Generic Structures Project-a Retrospective ReviewMichael F. Lynch, John D. Holliday. jcisd, 36(5):930-936, 1996. [doi]

1995

Computer Storage and Retrieval of Generic Chemical Structures in Patents, 17. Evaluation of the Refined SearchJohn D. Holliday, Michael F. Lynch. jcisd, 35(4):659-662, 1995.

Computer Storage and Retrieval of Generic Chemical Structures in Patents, 16. The Refined Search: An Algorithm for Matching Components of Generic Chemical Structures at the Atom-Bond LevelJohn D. Holliday, Michael F. Lynch. jcisd, 35(1):1-7, 1995.

1994

Evaluation of the screening stages of the Sheffield Research Project on Computer Storage and Retrieval of Generic Chemical Structures in PatentsJohn D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch, Winfried Dethlefsen. jcisd, 34(1):39-46, 1994. [doi]

1993

Computer storage and retrieval of generic chemical structures in patents. 15. Generation of topological fragment descriptors from nontopological representations of generic structure componentsJohn D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch. jcisd, 33(3):369-377, 1993. [doi]

1992

Computer storage and retrieval of generic chemical structures in patents. 14. Fragment generation from generic structuresJohn D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch. jcisd, 32(5):453-462, 1992. [doi]

1991

Computer storage and retrieval of generic chemical structures in patents. 11. Theoretical aspects of the use of structure languages in a retrieval systemWinfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard. jcisd, 31(2):233-253, 1991. [doi]

Computer storage and retrieval of generic chemical structures in patents. 12. Principles of search operations involving parameter lists: matching-relations, user-defined match levels, and transition from the reduced graph search to the refined searchWinfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard. jcisd, 31(2):253-260, 1991. [doi]

Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generationValerie J. Gillet, Geoffrey M. Downs, John D. Holliday, Michael F. Lynch, Winfried Dethlefsen. jcisd, 31(2):260-270, 1991. [doi]

1989

Computer storage and retrieval of generic chemical structures in patents. 9. An algorithm to find the extended set of smallest rings in structurally explicit genericsGeoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch. jcisd, 29(3):207-214, 1989. [doi]

Theoretical aspects of ring perception and development of the extended set of smallest rings conceptGeoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch. jcisd, 29(3):187-206, 1989. [doi]

Review of ring perception algorithms for chemical graphsGeoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch. jcisd, 29(3):172-187, 1989. [doi]

Computer storage and retrieval of generic chemical structures in patents. 10. Assignment and logical bubble-up of ring screens for structurally explicit genericsGeoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch. jcisd, 29(3):215-224, 1989. [doi]

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1989

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