John M. Greally - researchr alias

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Viewing Publication 1 - 8 from 8

2024

Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritizationSamuel Rosean, Eric A. Sosa, Donal F. O'Shea, Srilakshmi M. Raj, Cathal Seoighe, John M. Greally. bmcbi, 25(1):179, December 2024. [doi]

2020

The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic dataLaurence de Torrenté, Samuel E. Zimmerman, Masako Suzuki, Maximilian Christopeit, John M. Greally, Jessica C. Mar. bmcbi, 21-S(21):562, 2020. [doi]

AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEXKevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden. bioinformatics, 36(9):2905-2906, 2020. [doi]

2019

Aneuvis: web-based exploration of numerical chromosomal variation in single cellsDaniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica C. Mar. bmcbi, 20(1), 2019. [doi]

2017

SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic informationN. Ari Wijetunga, Andrew D. Johnston, Ryo Maekawa, Fabien Delahaye, Netha Ulahannan, Kami Kim, John M. Greally. bmcbi, 18(1), 2017. [doi]

2012

The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDEAaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally. healthgrid 2012: 182-191 [doi]

2009

A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometryReid F. Thompson, Masako Suzuki, Kevin W. Lau, John M. Greally. bioinformatics, 25(17):2164-2170, 2009. [doi]

2008

An analytical pipeline for genomic representations used for cytosine methylation studiesReid F. Thompson, Mark Reimers, Batbayar Khulan, Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally. bioinformatics, 24(9):1161-1167, 2008. [doi]

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