Lucas Czech - researchr alias

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Viewing Publication 1 - 7 from 7

2022

Metagenomic Analysis Using Phylogenetic Placement - A Review of the First DecadeLucas Czech, Alexandros Stamatakis, Micah Dunthorn, Pierre Barbera. fbinf, 2, 2022. [doi]

grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence readsLucas Czech, Moises Exposito-Alonso. bioinformatics, 38(20):4809-4811, October 2022. [doi]

2021

Swarm v3: towards tera-scale amplicon clusteringFrédéric Mahé, Lucas Czech, Alexandros Stamatakis, Christopher Quince, Colomban de Vargas, Micah Dunthorn, Torbjørn Rognes. bioinformatics, 38(1):267-269, 2021. [doi]

2020

Novel Methods for Analyzing and Visualizing Phylogenetic PlacementsLucas Czech. PhD thesis, Karlsruhe University, Germany, 2020. [doi]

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) dataLucas Czech, Pierre Barbera, Alexandros Stamatakis. bioinformatics, 36(10):3263-3265, 2020. [doi]

2019

Methods for automatic reference trees and multilevel phylogenetic placementLucas Czech, Pierre Barbera, Alexandros Stamatakis. bioinformatics, 35(7):1151-1158, 2019. [doi]

2017

An Efficient Approach to Merging Paired-End Reads and Incorporation of UncertaintiesTomás Flouri, Jiajie Zhang, Lucas Czech, Kassian Kobert, Alexandros Stamatakis. In Mourad Elloumi, editor, Algorithms for Next-Generation Sequencing Data, Techniques, Approaches, and Applications. pages 299-325, Springer, 2017. [doi]

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