Manolis Maragkakis - researchr alias

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Viewing Publication 1 - 14 from 14

2021

SamQL: a structured query language and filtering tool for the SAM/BAM file formatChristopher T. Lee, Manolis Maragkakis. bmcbi, 22(1):474, 2021. [doi]

2017

bíogo: a simple high-performance bioinformatics toolkit for the Go languageR. Daniel Kortschak, Josh Bleecher Snyder, Manolis Maragkakis, David L. Adelson. jossw, 2(10):167, 2017. [doi]

2013

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAsMaria D. Paraskevopoulou, Georgios Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore Dalamagas, Artemis G. Hatzigeorgiou. nar, 41(Database-Issue):239-245, 2013. [doi]

2012

Functional microRNA targets in protein coding sequencesMartin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou. bioinformatics, 28(6):771-776, 2012. [doi]

TARCLOUD: A Cloud-Based Platform to Support miRNA Target PredictionThanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis. ssdbm 2012: 628-633 [doi]

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental supportThanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou. nar, 40(Database-Issue):222-229, 2012. [doi]

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathwaysIoannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou. nar, 40(Web-Server-Issue):498-504, 2012. [doi]

2011

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease associationManolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou. nar, 39(Web-Server-Issue):145-148, 2011. [doi]

2010

FreePub: Collecting and Organizing Scientific Material Using MindmapsTheodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou. swat4ls 2010: [doi]

Predicting miRNA targets utilizing an Extended Profile HMMJan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch. gcb 2010: 81-91

2009

Lost in translation: an assessment and perspective for computational microRNA target identificationPanagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou. bioinformatics, 25(23):3049-3055, 2009. [doi]

Accurate microRNA target prediction correlates with protein repression levelsManolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou. bmcbi, 10:295, 2009. [doi]

DIANA-microT web server: elucidating microRNA functions through target predictionManolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, T. Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou. nar, 37(Web-Server-Issue):273-276, 2009. [doi]

DIANA-mirPath: Integrating human and mouse microRNAs in pathwaysGiorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou. bioinformatics, 25(15):1991-1993, 2009. [doi]

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