Olivier Michielin - researchr alias

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Viewing Publication 1 - 26 from 26

2023

2022

2020

2019

SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small moleculesAntoine Daina, Olivier Michielin, Vincent Zoete. nar, 47(Webserver-Issue), 2019. [doi]

MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic DataJean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Mickaël Misbach, João Sá Sousa, Sylvain Pradervand, Edoardo Missiaglia, Olivier Michielin, Bryan Ford, Jean-Pierre Hubaux. tcbb, 16(4):1328-1341, 2019. [doi]

2016

Attracting cavities for docking. Replacing the rough energy landscape of the protein by a smooth attracting landscapeVincent Zoete, Thierry Schüpbach, Christophe Bovigny, Prasad Chaskar, Antoine Daina, Ute F. Röhrig, Olivier Michielin. jcc, 37(4):437-447, 2016. [doi]

SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual ScreeningVincent Zoete, Antoine Daina, Christophe Bovigny, Olivier Michielin. jcisd, 56(8):1399-1404, 2016. [doi]

2014

n-Octanol/Water Partition Coefficient for Drug Design Using the GB/SA ApproachAntoine Daina, Olivier Michielin, Vincent Zoete. jcisd, 54(12):3284-3301, 2014. [doi]

SwissTargetPrediction: a web server for target prediction of bioactive small moleculesDavid Gfeller, Aurélien Grosdidier, Matthias Wirth, Antoine Daina, Olivier Michielin, Vincent Zoete. nar, 42(Webserver-Issue):32-38, 2014. [doi]

2013

Shaping the interaction landscape of bioactive moleculesDavid Gfeller, Olivier Michielin, Vincent Zoete. bioinformatics, 29(23):3073-3079, 2013. [doi]

SwissSidechain: a molecular and structural database of non-natural sidechainsDavid Gfeller, Olivier Michielin, Vincent Zoete. nar, 41(Database-Issue):327-332, 2013. [doi]

SwissBioisostere: a database of molecular replacements for ligand designMatthias Wirth, Vincent Zoete, Olivier Michielin, Wolfgang H. B. Sauer. nar, 41(Database-Issue):1137-1143, 2013. [doi]

Protein pocket and ligand shape comparison and its application in virtual screeningMatthias Wirth, Andrea Volkamer, Vincent Zoete, Friedrich Rippmann, Olivier Michielin, Matthias Rarey, Wolfgang H. B. Sauer. jcamd, 27(6):511-524, 2013. [doi]

2012

Expanding molecular modeling and design tools to non-natural sidechainsDavid Gfeller, Olivier Michielin, Vincent Zoete. jcc, 33(18):1525-1535, 2012. [doi]

Defining and searching for structural motifs using DeepView/Swiss-PdbViewerMaria U. Johansson, Vincent Zoete, Olivier Michielin, Nicolas Guex. bmcbi, 13:173, 2012. [doi]

2011

Fast docking using the CHARMM force field with EADock DSSAurélien Grosdidier, Vincent Zoete, Olivier Michielin. jcc, 32(10):2149-2159, 2011. [doi]

SwissDock, a protein-small molecule docking web service based on EADock DSSAurélien Grosdidier, Vincent Zoete, Olivier Michielin. nar, 39(Web-Server-Issue):270-277, 2011. [doi]

SwissParam: A fast force field generation tool for small organic moleculesVincent Zoete, Michel A. Cuendet, Aurélien Grosdidier, Olivier Michielin. jcc, 32(11):2359-2368, 2011. [doi]

2010

Fourier transform convolution integrals applied to generalized Born molecular volumeThierry SchÃ¼pbach, Vincent Zoete, Brice Tsakam-SotchÃ©, Olivier Michielin. jcc, 31(3):649-659, 2010. [doi]

2009

Blind docking of 260 protein-ligand complexes with EADock 2.0AurÃ©lien Grosdidier, Vincent Zoete, Olivier Michielin. jcc, 30(13):2021-2030, 2009. [doi]

Docking to heme proteinsUte F. RÃ¶hrig, AurÃ©lien Grosdidier, Vincent Zoete, Olivier Michielin. jcc, 30(14):2305-2315, 2009. [doi]

2003

Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitorsVincent Zoete, Olivier Michielin, Martin Karplus. jcamd, 17(12):861-880, 2003.

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