Philip Bradley - researchr alias

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Viewing Publication 1 - 7 from 7

2026

TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypesKoshlan Mayer-Blackwell, Anastasia A. Minervina, Mikhail Pogorelyy, Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters, Emily S. Ford, Amanda Posgai, Kasi Vegesana, Samuel Minot, David M. Koelle, Victor Greiff, Philip Bradley, Todd M. Brusko, Paul G. Thomas, Andrew Fiore-Gartland. ploscb, 22(1):1013767, 2026. [doi]

2023

Neural network models for sequence-based TCR and HLA association predictionSi Liu, Philip Bradley, Wei Sun. ploscb, 19(11), November 2023. [doi]

2022

Comparing T cell receptor repertoires using optimal transportBranden J. Olson, Stefan A. Schattgen, Paul G. Thomas, Philip Bradley, Frederick A. Matsen IV. ploscb, 18(12):1010681, December 2022. [doi]

2020

2015

Rational design of α-helical tandem repeat proteins with closed architecturesLindsey Doyle, Jazmine Hallinan, Jill Bolduc, Fabio Parmeggiani, David Baker, Barry L. Stoddard, Philip Bradley. nature, 528(7583):585-588, 2015. [doi]

2010

How do amino acid mismatches affect the outcome of hematopoietic cell transplants?: a structural perspectiveChen Yanover, Mari Malkki, Ted Gooley, Effie W. Petersdorf, Philip Bradley. bcb 2010: 627-633 [doi]

2007

Feature Selection Methods for Improving Protein Structure Prediction with RosettaBen Blum, Michael I. Jordan, David Kim, Rhiju Das, Philip Bradley, David Baker. nips 2008: 137-144 [doi]

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