Sook Jung - researchr alias

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Viewing Publication 1 - 23 from 23

2023

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciencesCecilia H. Deng, Sushma Naithani, Sunita Kumari, Irene Cobo-Simón, Elsa H. Quezada-Rodríguez, Mária Skrabisová, Nick Gladman, Melanie J. Correll, Akeem Babatunde Sikiru, Olusola O. Afuwape, Annarita Marrano, Ines Rebollo, Wentao Zhang, Sook Jung. biodb, 2023, 2023. [doi]

2021

The Breeding Information Management System (BIMS): an online resource for crop breedingSook Jung, Taein Lee, Ksenija Gasic, B. Todd Campbell, Jing Yu 0002, Jodi L. Humann, Sushan Ru, Daniel Edge-Garza, Heidi Hough, Dorrie Main. biodb, 2021, 2021. [doi]

Tripal MegaSearch: a tool for interactive and customizable query and download of big dataSook Jung, Chun-Huai Cheng, Katheryn Buble, Taein Lee, Jodi L. Humann, Jing Yu 0002, James Crabb, Heidi Hough, Dorrie Main. biodb, 2021, 2021. [doi]

2020

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databasesShawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, Frank Alex Feltus, Stephen P. Ficklin. biodb, 2020, 2020. [doi]

2019

Tripal MapViewer: A tool for interactive visualization and comparison of genetic mapsKatheryn Buble, Sook Jung, Jodi L. Humann, Jing Yu 0002, Chun-Huai Cheng, Taein Lee, Stephen P. Ficklin, Heidi Hough, Bradford Condon, Margaret E. Staton, Jill L. Wegrzyn, Dorrie Main. biodb, 2019, 2019. [doi]

Growing and cultivating the forest genomics database, TreeGenesTaylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn. biodb, 2019, 2019. [doi]

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databasesShawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin. biodb, 2019, 2019. [doi]

2018

Growing and cultivating the forest genomics database, TreeGenesTaylor Falk, Nic Herndon, Emily Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank A. Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn. biodb, 2018, 2018. [doi]

AgBioData consortium recommendations for sustainable genomics and genetics databases for agricultureLisa C. Harper, Jacqueline Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton Birkett, Steve Cannon, James Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew Farmer, Stephen P. Ficklin, David Grant, Emily Grau, Nic Herndon, Zhi-Liang Hu, Jodi Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main. biodb, 2018, 2018. [doi]

Association Mapping for Forest Trees with CartograTreeNic Herndon, Taylor Falk, Emily S. Grau, Sook Jung, Stephen P. Ficklin, Dorrie Main, Margaret E. Staton, Jill L. Wegrzyn. In Anne E. Thessen, editor, Application of Semantic Technology in Biodiversity Science. Volume 33 of Studies on the Semantic Web, pages 137-149, IOS Press, 2018. [doi]

2017

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databasesSook Jung, Taein Lee, Chun-Huai Cheng, Stephen P. Ficklin, Jing Yu, Jodi Humann, Dorrie Main. biodb, 2017, 2017. [doi]

2016

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in ChadoSook Jung, Taein Lee, Stephen P. Ficklin, Jing Yu, Chun-Huai Cheng, Dorrie Main. biodb, 2016, 2016. [doi]

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in ChadoSook Jung, Taein Lee, Stephen P. Ficklin, Jing Yu, Chun-Huai Cheng, Dorrie Main. biodb, 2016, 2016. [doi]

2014

The Genome Database for Rosaceae (GDR): year 10 updateSook Jung, Stephen P. Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Ping Zheng, Jing Yu, Aureliano Bombarely, Ilhyung Cho, Sushan Ru, Kate Evans, Cameron Peace, Albert G. Abbott, Lukas A. Mueller, Mercy A. Olmstead, Dorrie Main. nar, 42(Database-Issue):1237-1244, 2014. [doi]

CottonGen: a genomics, genetics and breeding database for cotton researchJing Yu, Sook Jung, Chun-Huai Cheng, Stephen P. Ficklin, Taein Lee, Ping Zheng, Don Jones, Richard G. Percy, Dorrie Main. nar, 42(Database-Issue):1229-1236, 2014. [doi]

2013

2011

2008

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics dataSook Jung, Margaret Staton, Taein Lee, Anna Blenda, Randall Svancara, Albert Abbott, Dorrie Main. nar, 36(Database-Issue):1034-1040, 2008. [doi]

2004

GDR (::::G::::enome ::::D::::atabase for ::::R::::osaceae): integrated web resources for Rosaceae genomics and genetics researchSook Jung, Christopher Jesudurai, Margaret Staton, Zhidian Du, Stephen Ficklin, Ilhyung Cho, Albert Abbott, Jeffrey Tomkins, Dorrie Main. bmcbi, 5:130, 2004. [doi]

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