Vladimir A. Ivanisenko - researchr alias

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Viewing Publication 1 - 27 from 27

2024

Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infectionEvgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko. jib, 20(3), December 2024. [doi]

Integrating omics databases for enhanced crop breedingHaoyu Chao, Shilong Zhang, Yueming Hu, Qingyang Ni, Saige Xin, Liang Zhao, Vladimir A. Ivanisenko, Yuriy L. Orlov, Ming Chen 0005. jib, 20(4), January 2024. [doi]

Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoderYulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek. jib, 20(3), December 2024. [doi]

2020

ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literatureTimofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostianov, Vladimir A. Ivanisenko. bmcbi, 21-S(11):228, 2020. [doi]

2019

A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expressionVladimir A. Ivanisenko, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena L. Mishchenko, Olga V. Saik. bmcbi, 20-S(1):5-15, 2019. [doi]

2018

Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid DiseasesElena Yu. Bragina, Irina A. Goncharova, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva, Vladimir A. Ivanisenko, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin. jib, 15(4), 2018. [doi]

shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with AsthmaTatiana Drevytska, Roman Morhachov, Lesya Tumanovska, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev, Tatiana Lapikova-Bryhinska, Veronika Gurianova, Borys Dons'koi, Maxim B. Freidin, Vladimir A. Ivanisenko, Elena Yu. Bragina, Ralf Hofestädt, Victor E. Dosenko. jib, 15(4), 2018. [doi]

Integrative Analysis of Co-Morbid Multifactorial DiseasesRalf Hofestädt, Vladimir A. Ivanisenko. jib, 15(4), 2018. [doi]

Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific LiteratureOlga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko. jib, 15(4), 2018. [doi]

GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene NetworksAlban Shoshi, Ralf Hofestädt, Olga I. Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A. Ivanisenko, Victor E. Dosenko, Elena Yu. Bragina. jib, 15(4), 2018. [doi]

2017

SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genesIrina Medvedeva, Pavel S. Demenkov, Vladimir A. Ivanisenko. jbcb, 15(2):1-14, 2017. [doi]

A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networksOlga V. Petrovskaya, Evgeny D. Petrovskiy, Inna N. Lavrik, Vladimir A. Ivanisenko. jbcb, 15(2):1-14, 2017. [doi]

2015

Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome)Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko. bmcsb, 9(S-2), 2015. [doi]

ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biologyVladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov. bmcsb, 9(S-2), 2015. [doi]

Permanent proteins in the urine of healthy humans during the Mars-500 experimentIrina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov, Marc-Antoine Custaud, Igor V. Dobrokhotov, Evgeny N. Nikolaev, Nikolay A. Kolchanov, Vladimir A. Ivanisenko. jbcb, 13(1), 2015. [doi]

2014

Text Mining on PubMedTimofey V. Ivanisenko, Pavel S. Demenkov, Vladimir A. Ivanisenko. In Ming Chen 0005, Ralf Hofestädt, editors, Approaches in Integrative Bioinformatics - Towards the Virtual Cell. pages 161-170, Springer, 2014. [doi]

2013

2012

ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystemPavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko. isb, 11(3-4):149-161, 2012. [doi]

SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genesIrina Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko. nar, 40(Database-Issue):278-283, 2012. [doi]

2010

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse ApproachesBjörn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt. jib, 7(1), 2010. [doi]

2007

2005

PDBSite: a database of the 3D structure of protein functional sitesVladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov. nar, 33(Database-Issue):183-187, 2005. [doi]

WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein familiesVladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov. nar, 33(Web-Server-Issue):99-104, 2005. [doi]

2004

PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteinsVladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov. nar, 32(Web-Server-Issue):549-554, 2004.

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