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Alexsandro Oliveira Alexandrino
Ana Carolina Lorena
Ana L. C. Bazzan
Andre Rodrigues Oliveira
André Carlos Ponce Leon Ferreira de Carvalho
Duncan D. Ruiz
Elvismary Molina de Armas
Fernando J. Von Zuben
Ivan G. Costa
João C. Setubal
Luis Antonio Brasil Kowada
Marcelo M. Brigido
Maria Emilia M. T. Walter
Maria Emilia Telles Walter
Osmar Norberto de Souza
Peter F. Stadler
Ronnie Alves
Sérgio Lifschitz
Ulisses Dias
Zanoni Dias
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Viewing Publication 1 - 100 from 364
2023
Block Interchange and Reversal Distance on Unbalanced Genomes
Alexsandro Oliveira Alexandrino
,
Gabriel Siqueira
,
Klairton Lima Brito
,
Andre Rodrigues Oliveira
,
Ulisses Dias
,
Zanoni Dias
.
wob 2023
:
1-13
[doi]
Feature Selection Investigation in Machine Learning Docking Scoring Functions
Maurício Dorneles Caldeira Balboni
,
Oscar Emilio Arrúa Arce
,
Adriano Velasque Werhli
,
Karina dos Santos Machado
.
wob 2023
:
58-69
[doi]
circTIS: A Weighted Degree String Kernel with Support Vector Machine Tool for Translation Initiation Sites Prediction in circRNA
Denilson F. Barbosa
,
Liliane Santana Oliveira
,
André Yoshiaki Kashiwabara
.
wob 2023
:
14-24
[doi]
transcAnalysis: A Snakemake Pipeline for Differential Expression and Post-transcriptional Modification Analysis
Pedro H. A. Barros
,
Waldeyr M. C. Silva
,
Marcelo M. Brigido
.
wob 2023
:
106-111
[doi]
A Framework for Inference and Selection of Cell Signaling Pathway Dynamic Models
Marcelo Batista
,
Fabio Montoni
,
Cristiano G. S. Campos
,
Ronaldo N. De Sousa
,
Hugo A. Armelin
,
Marcelo da Silva Reis
.
wob 2023
:
82-93
[doi]
Gene Networks Inference by Reinforcement Learning
Rodrigo Cesar Bonini
,
David Correa Martins Jr.
.
wob 2023
:
136-147
[doi]
Using Natural Language Processing for Context Identification in COVID-19 Literature
Frederico Chaves Carvalho
,
Diego C. B. Mariano
,
Marcos Bomfim
,
Giovana Fiorini
,
Luana L. Bastos
,
Ana Paula de Abreu
,
Vivian Paixão
,
Lucas Moraes dos Santos
,
Juliana Silva
,
Angie Puelles
,
Alessandra Lima da Silva
,
Raquel Cardoso de Melo Minardi
.
wob 2023
:
70-81
[doi]
Make No Mistake! Why Do Tools Make Incorrect Long Non-coding RNA Classification?
Alisson G. Chiquitto
,
Lucas Otávio L. Silva
,
Liliane Santana Oliveira
,
Douglas Silva Domingues
,
Alexandre Rossi Paschoal
.
wob 2023
:
36-45
[doi]
Advances in Bioinformatics and Computational Biology - 16th Brazilian Symposium on Bioinformatics, BSB 2023, Curitiba, Brazil, June 13-16, 2023, Proceedings
Marcelo da Silva Reis
,
Raquel Cardoso de Melo Minardi
, editors,
Volume 13954 of
Lecture Notes in Computer Science
, Springer,
2023.
[doi]
Evaluating the Molecular - Electronic Structure and the Antiviral Effect of Functionalized Heparin on Graphene Oxide Through Ab Initio Computer Simulations and Molecular Docking
André Flores dos Santos
,
Mirkos Ortiz Martins
,
Mariana Zancan Tonel
,
Solange Binotto Fagan
.
wob 2023
:
25-35
[doi]
Peptide-Protein Interface Classification Using Convolutional Neural Networks
Lucas Moraes dos Santos
,
Diego C. B. Mariano
,
Luana Luiza Bastos
,
Alessandra Gomes Cioletti
,
Raquel Cardoso de Melo Minardi
.
wob 2023
:
112-122
[doi]
Intentional Semantics for Molecular Biology
Edward Hermann Haeusler
,
Bruno Cuconato
,
Luiz A. Glatzl
,
Maria L. Guateque
,
Diogo Munaro Vieira
,
Elvismary Molina de Armas
,
Fernanda Baião
,
Marcos Catanho
,
Antonio B. de Miranda
,
Sérgio Lifschitz
.
wob 2023
:
94-105
[doi]
A Power Law Semantic Similarity from Gene Ontology
Eric Augusto Ito
,
Fábio Fernandes da Rocha Vicente
,
Luiz Filipe Protasio Pereira
,
Fabrício Martins Lopes
.
wob 2023
:
123-135
[doi]
Exploring Identifiability in Hybrid Models of Cell Signaling Pathways
Ronaldo N. De Sousa
,
Cristiano G. S. Campos
,
Willian Wang
,
Ronaldo Fumio Hashimoto
,
Hugo Aguirre Armelin
,
Marcelo da Silva Reis
.
wob 2023
:
148-159
[doi]
Spectrum-Based Statistical Methods for Directed Graphs with Applications in Biological Data
Victor Chavauty Villela
,
Eduardo Silva Lira
,
André Fujita
.
wob 2023
:
46-57
[doi]
2022
A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time
Alexsandro Oliveira Alexandrino
,
Klairton Lima Brito
,
Andre Rodrigues Oliveira
,
Ulisses Dias
,
Zanoni Dias
.
wob 2022
:
147-157
[doi]
Search for Zinc Complexes with High Affinity in Pyrazinamidase from Mycobacterium Tuberculosis Resistant to Pyrazinamide
Jesus Alvarado-Huayhuaz
,
Daniel Alonso Talaverano-Rojas
,
Reneé Isabel Huamán Quispe
,
Maurício Dorneles Caldeira Balboni
,
Oscar Emilio Arrúa Arce
,
Adriano Velasque Werhli
,
Karina dos Santos Machado
,
Ana Cecilia Valderrama-Negrón
.
wob 2022
:
109-120
[doi]
Study on the Complexity of Omics Data: An Analysis for Cancer Survival Prediction
Carlos Daniel Andrade
,
Thomas V. Fontanari
,
Mariana Recamonde Mendoza
.
wob 2022
:
44-55
[doi]
A Non Exhaustive Search of Exhaustiveness
Letícia Kristian Silva Cecotti
,
Maurício Dorneles Caldeira Balboni
,
Oscar Emilio Arrúa Arce
,
Karina dos Santos Machado
,
Adriano Velasque Werhli
.
wob 2022
:
97-108
[doi]
Evaluating Machine Learning Models for Essential Protein Identification
Jessica da Silva Costa
,
Jorge Gabriel Rodrigues
,
Kele T. Belloze
.
wob 2022
:
38-43
[doi]
In Silico Analysis of the Genomic Potential for the Production of Specialized Metabolites of Ten Strains of the Bacillales Order Isolated from the Soil of the Federal District, Brazil
Felipe de Araújo Mesquita
,
Waldeyr Mendes Cordeiro da Silva
,
Marlene Teixeira De-Souza
.
wob 2022
:
158-163
[doi]
An External Memory Approach for Large Genome De Novo Assembly
Elvismary Molina de Armas
,
Sérgio Lifschitz
.
wob 2022
:
79-90
[doi]
Comparison of Machine Learning Pipelines for Gene Expression Matrices
Mateus Devino
,
Kele T. Belloze
,
Eduardo Bezerra 0002
.
wob 2022
:
32-37
[doi]
Clustering Analysis Indicates Genes Involved in Progesterone-Induced Oxidative Stress in Pancreatic Beta Cells: Insights to Understanding Gestational Diabetes
Lara Marinelli Dativo dos Santos
,
Patricia Rufino Oliveira
,
Anna Karenina Azevedo Martins
.
wob 2022
:
68-78
[doi]
Identifying Large Scale Conformational Changes in Proteins Through Distance Maps and Convolutional Networks
Lucas Moraes dos Santos
,
Raquel Cardoso de Melo Minardi
.
wob 2022
:
56-67
[doi]
Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar
Dustyn Eggers
,
Christian Höner zu Siederdissen
,
Peter F. Stadler
.
wob 2022
:
20-31
[doi]
How Bioinformatics Can Aid Biodiversity Description: The Case of a Probable New Species of Orthonychiurus (Collembola, Hexapoda)
Maithe Gaspar Pontes Magalhaes
,
Marilia Alves Figueira Melo
,
Gabriel Costa Queiroz
,
Aline dos Santos Moreira
,
Wim Degrave
,
Thiago Estevam Parente
.
wob 2022
:
121-127
[doi]
Water Pollution Shifts the Soil and Fish Gut Microbiomes Increasing the Circulation of Antibiotic Resistance Genes in the Environment
Maithe Gaspar Pontes Magalhaes
,
Marilia Alves Figueira Melo
,
Aline dos Santos Moreira
,
Wim M. Degrave
,
Thiago Estevam Parente
.
wob 2022
:
140-146
[doi]
BDDBlast - A Memory Efficient Architecture for Pairwise Alignments
Demian Oliveira
,
Alessandra Conceição Faria-Campos
,
Sérgio Campos
.
wob 2022
:
1-13
[doi]
Phylogeny Trees as a Tool to Compare Inference Algorithms of Orthologs
Rafael Oliveira
,
Saul de Castro Leite
,
Fernanda Nascimento Almeida
.
wob 2022
:
128-139
[doi]
Computational Methodology for Discovery of Potential Inhibitory Peptides
Vivian Morais Paixão
,
Raquel Cardoso de Melo Minardi
.
wob 2022
:
91-96
[doi]
Advances in Bioinformatics and Computational Biology - 15th Brazilian Symposium on Bioinformatics, BSB 2022, Buzios, Brazil, September 21-23, 2022, Proceedings
Nicole M. Scherer
,
Raquel Cardoso de Melo Minardi
, editors,
Volume 13523 of
Lecture Notes in Computer Science
, Springer,
2022.
[doi]
Scientific Workflow Interactions: An Application to Cancer Gene Identification
Diogo Munaro Vieira
,
Alexandre Heine
,
Elvismary Molina de Armas
,
Cristovão Antunes de Lanna
,
Mariana Boroni
,
Sérgio Lifschitz
.
wob 2022
:
14-19
[doi]
2021
FluxPRT: An Adaptable and Extensible Proteomics LIMS
Elizabeth Regina Alfaro-Espinoza
,
Lucas Ferreira Paiva
,
Alessandra C. Faria-Campos
,
Maria Cristina Baracat-Pereira
,
Sérgio Vale Aguiar Campos
.
wob 2021
:
125-130
[doi]
MathPIP: Classification of Proinflammatory Peptides Using Mathematical Descriptors
João Pedro Uchôa Cavalcante
,
Anderson Cardoso Gonçalves
,
Robson Parmezan Bonidia
,
Danilo Sipoli Sanches
,
André Carlos Ponce de Leon Ferreira de Carvalho
.
wob 2021
:
131-136
[doi]
Feature Importance Analysis of Non-coding DNA/RNA Sequences Based on Machine Learning Approaches
Breno Lívio Silva de Almeida
,
Alvaro Pedroso Queiroz
,
Anderson Paulo Avila Santos
,
Robson Parmezan Bonidia
,
Ulisses Nunes da Rocha
,
Danilo Sipoli Sanches
,
André Carlos Ponce de Leon Ferreira de Carvalho
.
wob 2021
:
81-92
[doi]
Deep Learning-Based COVID-19 Diagnostics of Low-Quality CT Images
Daniel Ferber
,
Felipe Vieira
,
João Dalben
,
Mariana Ferraz
,
Nicholas Sato
,
Gabriel Bianchin de Oliveira
,
Rafael Padilha
,
Zanoni Dias
.
wob 2021
:
69-80
[doi]
CEvADA: Co-Evolution Analysis Data Archive
Néli J. Fonseca-Júnior
,
Marcelo Querino Lima Afonso
,
Lucas Bleicher
.
wob 2021
:
119-124
[doi]
Metagenomic Insights of the Microbial Community from a Polluted River in Brazil 2020
Carolina O. P. Gil
,
Larissa Macedo Pinto
,
Flavio F. Nobre
,
Cristiane Thompson
,
Fabiano L. Thompson
,
Diogo Antonio Tschoke
.
wob 2021
:
137-144
[doi]
Combining Orthology and Xenology Data in a Common Phylogenetic Tree
Marc Hellmuth
,
Mira Michel
,
Nikolai N. Nøjgaard
,
David Schaller 0001
,
Peter F. Stadler
.
wob 2021
:
53-64
[doi]
Mesoscopic Evaluation of DNA Mismatches in PCR Primer-Target Hybridisation to Detect SARS-CoV-2 Variants of Concern
Pâmella Miranda
,
Vivianne Basílio Barbosa
,
Gerald Weber
.
wob 2021
:
145-150
[doi]
PIMBA: A PIpeline for MetaBarcoding Analysis
Renato R. M. Oliveira
,
Raíssa Silva
,
Gisele Lopes Nunes
,
Guilherme Oliveira
.
wob 2021
:
106-116
[doi]
Hypusine Plays a Role in the Translation of Short mRNAs and Mediates the Polyamine and Autophagy Pathways in Saccharomyces Cerevisiae
Ana Carolina Silva Paiva
,
Fernanda Manaia Demarqui
,
Mariana Marchi Santoni
,
Sandro Roberto Valentini
,
Cleslei Fernando Zanelli
.
wob 2021
:
15-25
[doi]
ContFree-NGS: Removing Reads from Contaminating Organisms in Next Generation Sequencing Data
Felipe Vaz Peres
,
Diego Mauricio Riaño-Pachón
.
wob 2021
:
65-68
[doi]
Topological Characterization of Cancer Driver Genes Using Reactome Super Pathways Networks
Rodrigo Henrique Ramos
,
Jorge Francisco Cutigi
,
Cynthia de Oliveira Lage Ferreira
,
Adenilso da Silva Simão
.
wob 2021
:
26-37
[doi]
Comparative Transcriptome Profiling of Maytenus ilicifolia Root and Leaf
Mariana Marchi Santoni
,
João Vítor Félix de Lima
,
Keylla Utherdyany Bicalho
,
Tatiana Maria de Souza Moreira
,
Sandro Roberto Valentini
,
Maysa Furlan
,
Cleslei Fernando Zanelli
.
wob 2021
:
3-14
[doi]
CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer
Vanessa S. Silva
,
Maiana O. C. Costa
,
Maria Clicia Stelling de Castro
,
Helena S. Silva
,
Maria Emília M. T. Walter
,
Alba C. M. A. Melo
,
Kary A. C. Ocaña
,
Marcelo T. dos Santos
,
Marisa F. Nicolas
,
Anna Cristina C. Carvalho
,
Andrea Henriques-Pons
,
Fabrício Alves Barbosa da Silva
.
wob 2021
:
41-52
[doi]
Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes
Gabriel Siqueira
,
Andre Rodrigues Oliveira
,
Alexsandro Oliveira Alexandrino
,
Zanoni Dias
.
wob 2021
:
93-105
[doi]
Advances in Bioinformatics and Computational Biology - 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22-26, 2021, Proceedings
Peter F. Stadler
,
Maria Emília M. T. Walter
,
Maribel Hernandez-Rosales
,
Marcelo M. Brigido
, editors,
Volume 13063 of
Lecture Notes in Computer Science
, Springer,
2021.
[doi]
2020
Natural Products as Potential Inhibitors for SARS-CoV-2 Papain-Like Protease: An in Silico Study
Jesus Alvarado-Huayhuaz
,
Fabian Jimenez
,
Gerson Cordova-Serrano
,
Ihosvany Camps
,
Wilmar Puma-Zamora
.
wob 2020
:
265-270
[doi]
Analyzing Switch Regions of Human Rab10 by Molecular Dynamics Simulations
Levy Bueno Alves
,
William O. Castillo-Ordoñez
,
Silvana Giuliatti
.
wob 2020
:
215-220
[doi]
Center Genome with Respect to the Rank Distance
Priscila Biller
,
João Paulo Pereira Zanetti
,
João Meidanis
.
wob 2020
:
141-149
[doi]
In silico Pathogenomic Analysis of Corynebacterium Pseudotuberculosis Biovar Ovis
Iago Rodrigues Blanco
,
Carlos Leonardo Araújo
,
Adriana Carneiro Folador
.
wob 2020
:
38-49
[doi]
Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach
Marcus Braga
,
Kenny Pinheiro
,
Fabrício Araújo
,
Fábio Miranda 0002
,
Artur Silva
,
Rommel Ramos
.
wob 2020
:
13-24
[doi]
ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs
Leodécio Braz
,
Vinicius Teixeira
,
Hélio Pedrini
,
Zanoni Dias
.
wob 2020
:
150-161
[doi]
A Simplified Complex Network-Based Approach to mRNA and ncRNA Transcript Classification
Murilo Montanini Breve
,
Fabrício Martins Lopes
.
wob 2020
:
192-203
[doi]
Sorting by Reversals and Transpositions with Proportion Restriction
Klairton Lima Brito
,
Alexsandro Oliveira Alexandrino
,
Andre Rodrigues Oliveira
,
Ulisses Dias
,
Zanoni Dias
.
wob 2020
:
117-128
[doi]
Assessing the Sex-Related Genomic Composition Difference Using a k-mer-Based Approach: A Case of Study in Arapaima gigas (Pirarucu)
Renata Lilian Dantas Cavalcante
,
José Miguel Ortega
,
Jorge Estefano Santana de Souza
,
Tetsu Sakamoto
.
wob 2020
:
50-56
[doi]
Combining Mutation and Gene Network Data in a Machine Learning Approach for False-Positive Cancer Driver Gene Discovery
Jorge Francisco Cutigi
,
Renato Feijo Evangelista
,
Rodrigo Henrique Ramos
,
Cynthia de Oliveira Lage Ferreira
,
Adriane Feijo Evangelista
,
André C. P. L. F. de Carvalho
,
Adenilso Simão
.
wob 2020
:
81-92
[doi]
Importance of Meta-analysis in Studies Involving Plant Responses to Climate Change in Brazil
Janaina da Silva Fortirer
,
Adriana Grandis
,
Camila de Toledo Castanho
,
Marcos Silveira Buckeridge
.
wob 2020
:
221-234
[doi]
Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases
Waldeyr Mendes Cordeiro da Silva
,
Daniela P. de Andrade
,
Jakob L. Andersen
,
Maria Emilia Telles Walter
,
Marcelo M. Brigido
,
Peter F. Stadler
,
Christoph Flamm
.
wob 2020
:
247-258
[doi]
A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly
Elvismary Molina de Armas
,
Maristela Holanda
,
Daniel de Oliveira 0001
,
Nalvo F. Almeida
,
Sérgio Lifschitz
.
wob 2020
:
1-12
[doi]
COVID-19 X-ray Image Diagnostic with Deep Neural Networks
Gabriel Bianchin de Oliveira
,
Rafael Padilha
,
André Dorte
,
Luis Cereda
,
Luiz Miyazaki
,
Maurício Lopes
,
Zanoni Dias
.
wob 2020
:
57-68
[doi]
Polysome-seq as a Measure of Translational Profile from Deoxyhypusine Synthase Mutant in Saccharomyces cerevisiae
Fernanda Manaia Demarqui
,
Ana Carolina Silva Paiva
,
Mariana Marchi Santoni
,
Tatiana Faria Watanabe
,
Sandro Roberto Valentini
,
Cleslei Fernando Zanelli
.
wob 2020
:
168-179
[doi]
Experiencing DfAnalyzer for Runtime Analysis of Phylogenomic Dataflows
Luiz Gustavo Dias
,
Marta Mattoso
,
Bruno Lopes 0001
,
Daniel de Oliveira 0001
.
wob 2020
:
105-116
[doi]
Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile
Manuela M. do Almo
,
Isabel G. Sousa
,
Waldeyr Mendes Cordeiro da Silva
,
Thomas Gatter
,
Peter F. Stadler
,
Steve Hoffmann
,
Andrea Queiroz Maranhão
,
Marcelo M. Brigido
.
wob 2020
:
180-191
[doi]
Efficient Out-of-Core Contig Generation
Julio O. Prieto Entenza
,
Edward Hermann Haeusler
,
Sérgio Lifschitz
.
wob 2020
:
25-37
[doi]
Unraveling the Role of Nanobodies Tetrad on Their Folding and Stability Assisted by Machine and Deep Learning Algorithms
Matheus Vitor Ferreira Ferraz
,
Wenny Camilla dos Santos Adan
,
Roberto D. Lins
.
wob 2020
:
93-104
[doi]
A Systems Biology Driven Approach to Map the EP300 Interactors Using Comprehensive Protein Interaction Network
Shivananda Kandagalla
,
Maria Grishina
,
Vladimir Potemkin
,
Sharath Belenahalli Shekarappa
,
Pavan Gollapalli
.
wob 2020
:
204-214
[doi]
Advances in Bioinformatics and Computational Biology - 12th Brazilian Symposium on Bioinformatics, BSB 2019, Fortaleza, Brazil, October 7-10, 2019, Revised Selected Papers
Luis Antonio Brasil Kowada
,
Daniel de Oliveira 0001
, editors,
Volume 11347 of
Lecture Notes in Computer Science
, Springer,
2020.
[doi]
A Brief History of Bioinformatics Told by Data Visualization
Diego C. B. Mariano
,
Mívian M. Ferreira
,
Bruno L. Sousa
,
Lucianna Helene Santos
,
Raquel Cardoso de Melo Minardi
.
wob 2020
:
235-246
[doi]
Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems
Pedro Olímpio Pinheiro
,
Alexsandro Oliveira Alexandrino
,
Andre Rodrigues Oliveira
,
Cid Carvalho de Souza
,
Zanoni Dias
.
wob 2020
:
129-140
[doi]
Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks
Guilherme Tiaki Sassai Sato
,
Leodécio Braz da Silva Segundo
,
Zanoni Dias
.
wob 2020
:
69-80
[doi]
Advances in Bioinformatics and Computational Biology - 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23-27, 2020, Proceedings
João C. Setubal
,
Waldeyr M. C. Silva
, editors,
Volume 12558 of
Lecture Notes in Computer Science
, Springer,
2020.
[doi]
Oncogenic Signaling Pathways in Mucopolysaccharidoses
Gerda Cristal Villalba Silva
,
Luis Dias Ferreira Soares
,
Ursula Matte
.
wob 2020
:
259-264
[doi]
A Scientometric Overview of Bioinformatics Tools in the Pseudomonas Putida Genome Study
Alex Batista Trentin
,
Beatriz Thomas Metzner
,
Glecio Oliveira Barros
,
Deborah Catharine de Assis Leite
.
wob 2020
:
162-167
[doi]
2019
Predicting Cancer Patients' Survival Using Random Forests
Camila Takemoto Bertolini
,
Saul de Castro Leite
,
Fernanda Nascimento Almeida
.
wob 2020
:
96-106
[doi]
GeNWeMME: A Network-Based Computational Method for Prioritizing Groups of Significant Related Genes in Cancer
Jorge Francisco Cutigi
,
Adriane Feijo Evangelista
,
Adenilso da Silva Simão
.
wob 2020
:
29-40
[doi]
MDR SurFlexDock: A Semi-automatic Webserver for Discrete Receptor-Ensemble Docking
João Luiz de Almeida Filho
,
Jorge Hernandez Fernandez
.
wob 2020
:
41-47
[doi]
K-mer Mapping and RDBMS Indexes
Elvismary Molina de Armas
,
Paulo Cavalcanti Gomes Ferreira
,
Edward Hermann Haeusler
,
Maristela Terto de Holanda
,
Sérgio Lifschitz
.
wob 2020
:
70-82
[doi]
Block-Interchange Distance Considering Intergenic Regions
Ulisses Dias
,
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wob 2020
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58-69
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A Clustering Approach to Identify Candidates to Housekeeping Genes Based on RNA-seq Data
Edian F. Franco
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Dener Maués
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Ronnie Alves
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Luis Guimarães
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Vasco Azevedo
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Artur Silva
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Preetam Ghosh
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Jefferson Morais
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wob 2020
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83-95
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Identifying Schistosoma mansoni Essential Protein Candidates Based on Machine Learning
Francimary P. Garcia
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Gustavo Paiva Guedes
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Kele Teixeira Belloze
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wob 2020
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123-128
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Venom Gland Peptides of Arthropods from the Brazilian Cerrado Biome Unveiled by Transcriptome Analysis
Giovanni M. Guidini
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Waldeyr M. C. da Silva
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Thalita S. Camargos
,
Caroline F. B. Mourão
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Priscilla Galante
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Tainá Raiol
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Marcelo de Macedo Brígido
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Maria Emilia M. T. Walter
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Elisabeth N. F. Schwartz
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wob 2020
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48-57
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Searching in Silico Novel Targets for Specific Coffee Rust Disease Control
Jonathan D. Lima
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Bernard Maigret
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Diana Fernandez
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Jennifer Decloquement
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Danilo Pinho
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Erika V. S. Albuquerque
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wob 2020
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109-115
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A Domain Framework Approach for Quality Feature Analysis of Genome Assemblies
Guilherme Borba Neumann
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Elvismary Molina de Armas
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Fernanda Araújo Baião
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Sérgio Lifschitz
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wob 2020
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116-122
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On Clustering Validation in Metagenomics Sequence Binning
Paulo Oliveira
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Kleber Padovani de Souza
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wob 2020
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Genome Assembly Using Reinforcement Learning
Roberto Xavier
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Kleber Padovani de Souza
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Annie Chateau
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Ronnie Alves
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wob 2020
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16-28
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Identifying Maximal Perfect Haplotype Blocks
Luís Cunha
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Yoan Diekmann
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Luis Antonio Brasil Kowada
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Jens Stoye
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wob 2018
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26-37
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Graph Databases in Molecular Biology
Waldeyr Mendes Cordeiro da Silva
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Polyane Wercelens
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Maria Emilia M. T. Walter
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Maristela Holanda
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Marcelo M. Brigido
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wob 2018
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50-57
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AutoModel: A Client-Server Tool for Intuitive and Interactive Homology Modeling of Protein-Ligand Complexes
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A Genetic Algorithm for Character State Live Phylogeny
Rafael L. Fernandes
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Rogério Güths
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Guilherme P. Telles
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Maria Emilia M. T. Walter
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wob 2018
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114-123
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S^2FS : Single Score Feature Selection Applied to the Problem of Distinguishing Long Non-coding RNAs from Protein Coding Transcripts
Bruno C. Kümmel
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André C. P. L. F. de Carvalho
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Marcelo M. Brigido
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Célia Ghedini Ralha
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Maria Emilia M. T. Walter
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wob 2018
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103-113
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Super Short Reversals on Both Gene Order and Intergenic Sizes
Andre Rodrigues Oliveira
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Géraldine Jean
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Ulisses Dias
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wob 2018
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14-25
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ViMT - Development of a Web-Based Vivarium Management Tool
Cristiano Guimarães Pimenta
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Alessandra Conceição Faria-Campos
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Jerônimo Nunes Rocha
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Adriana Abalen Martins Dias
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Danielle da Glória de Souza
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wob 2018
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58-65
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Detecting Acute Lymphoblastic Leukemia in down Syndrome Patients Using Convolutional Neural Networks on Preprocessed Mutated Datasets
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wob 2018
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90-102
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An Argumentation Theory-Based Multiagent Model to Annotate Proteins
Daniel S. Souza
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Waldeyr Mendes Cordeiro da Silva
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Célia Ghedini Ralha
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Maria Emilia M. T. Walter
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wob 2018
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66-77
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Parallel Solution Based on Collective Communication Operations for Phylogenetic Bootstrapping in PhyML 3.0
Martha Torres
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wob 2018
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133-145
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A Workflow for Predicting MicroRNAs Targets via Accessibility in Flavivirus Genomes
Andressa Valadares
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Maria Emilia M. T. Walter
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Tainá Raiol
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wob 2018
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124-132
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