Journal: Algorithms for Molecular Biology

Volume 15, Issue 1

1 -- 0Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, Ananya Yammanuru, Tandy J. Warnow. Non-parametric correction of estimated gene trees using TRACTION
2 -- 0Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye. Finding all maximal perfect haplotype blocks in linear time
3 -- 0Loai AbedAllah, Malik Yousef. GrpClassifierEC: a novel classification approach based on the ensemble clustering space
4 -- 0Roland Wittler. Alignment- and reference-free phylogenomics with colored de Bruijn graphs
5 -- 0Peter F. Stadler, Manuela Geiß, David T. Schaller, Alitzel López, Marcos González Laffitte, Dulce I. Valdivia, Marc Hellmuth, Maribel Hernandez-Rosales. From pairs of most similar sequences to phylogenetic best matches
6 -- 0Mukul S. Bansal. Linear-time algorithms for phylogenetic tree completion under Robinson-Foulds distance
7 -- 0Wei Wang, Jack Smith, Hussein A. Hejase, Kevin J. Liu. Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences
8 -- 0Aniket C. Mane, Manuel Lafond, Pedro Cipriano Feijão, Cédric Chauve. The distance and median problems in the single-cut-or-join model with single-gene duplications
9 -- 0Yutong Qiu, Cong Ma, Han Xie, Carl Kingsford. Detecting transcriptomic structural variants in heterogeneous contexts via the Multiple Compatible Arrangements Problem
10 -- 0Hongyi Xin, Mingfu Shao, Carl Kingsford. Context-aware seeds for read mapping
11 -- 0Georgi D. Georgiev, Kevin F. Dodd, Brian Y. Chen. Precise parallel volumetric comparison of molecular surfaces and electrostatic isopotentials
12 -- 0Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos. Evolution through segmental duplications and losses: a Super-Reconciliation approach
13 -- 0Florent Guinot, Marie Szafranski, Julien Chiquet, Anouk Zancarini, Christine Le Signor, Christophe Mougel, Christophe Ambroise. Fast computation of genome-metagenome interaction effects
14 -- 0Tiziana Calamoneri, Mattia Gastaldello, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri. Algorithms for the quantitative Lock/Key model of cytoplasmic incompatibility
15 -- 0Thomas J. X. Li, Christian M. Reidys. On an enhancement of RNA probing data using information theory
16 -- 0Manuel Lafond, Marc Hellmuth. Reconstruction of time-consistent species trees
17 -- 0John L. Spouge, Joseph M. Ziegelbauer, Mileidy Gonzalez. A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups
18 -- 0Felipe A. Louza, Guilherme P. Telles, Simon Gog, Nicola Prezza, Giovanna Rosone. gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections
19 -- 0Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen. Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains