Journal: Algorithms for Molecular Biology

Volume 16, Issue 1

1 -- 0Peter Røgen. Quantifying steric hindrance and topological obstruction to protein structure superposition
2 -- 0Jens Zentgraf, Sven Rahmann. Fast lightweight accurate xenograft sorting
3 -- 0Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin. Improving metagenomic binning results with overlapped bins using assembly graphs
4 -- 0Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga. Natural family-free genomic distance
5 -- 0Cong Ma, Hongyu Zheng, Carl Kingsford. Exact transcript quantification over splice graphs
6 -- 0Kingshuk Mukherjee, Massimiliano Rossi 0001, Leena Salmela, Christina Boucher. Fast and efficient Rmap assembly using the Bi-labelled de Bruijn graph
7 -- 0Fenix W. D. Huang, Christopher L. Barrett, Christian M. Reidys. The energy-spectrum of bicompatible sequences
8 -- 0Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F. Stadler. LazyB: fast and cheap genome assembly
9 -- 0Katharina Jahn, Niko Beerenwinkel, Louxin Zhang. The Bourque distances for mutation trees of cancers
10 -- 0Amatur Rahman, Rayan Chikhi, Paul Medvedev. Disk compression of k-mer sets
11 -- 0Sven Schrinner, Manish Goel, Michael Wulfert, Philipp Spohr, Korbinian Schneeberger, Gunnar W. Klau. Using the longest run subsequence problem within homology-based scaffolding
12 -- 0Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow. Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation
13 -- 0Trevor S. Frisby, Christopher James Langmead. Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution
14 -- 0Leah L. Weber, Mohammed El-Kebir. Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors
15 -- 0Leonie Selbach, Tobias Kowalski, Klaus Gerwert, Maike Buchin, Axel Mosig. Shape decomposition algorithms for laser capture microdissection
16 -- 0Galia R. Zimerman, Dina Svetlitsky, Meirav Zehavi, Michal Ziv-Ukelson. Approximate search for known gene clusters in new genomes using PQ-trees
17 -- 0Hooman Zabeti, Nick Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch. INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis
18 -- 0Naveed Ahmed Azam, Jianshen Zhu, Yanming Sun, Yu Shi, Aleksandar Shurbevski, Liang Zhao 0013, Hiroshi Nagamochi, Tatsuya Akutsu. A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming
19 -- 0David Schaller 0001, Manuela Geiß, Marc Hellmuth, Peter F. Stadler. Heuristic algorithms for best match graph editing
20 -- 0Fabian Hausmann, Stefan Kurtz. DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention
21 -- 0Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Zanoni Dias. Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions
22 -- 0David Fernández-Baca, Lei Liu. Testing the agreement of trees with internal labels
23 -- 0David Schaller 0001, Marc Hellmuth, Peter F. Stadler. A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set
24 -- 0Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias. An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes
25 -- 0Tim Anderson, Travis J. Wheeler. An optimized FM-index library for nucleotide and amino acid search