Journal: Algorithms for Molecular Biology

Volume 17, Issue 1

1 -- 0Luiz Augusto G. Silva, Luis Antonio B. Kowada, Noraí Romeu Rocco, Maria Emília M. T. Walter. A new 1.375-approximation algorithm for sorting by transpositions
2 -- 0Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri. Efficiently sparse listing of classes of optimal cophylogeny reconciliations
3 -- 0Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir. Parsimonious Clone Tree Integration in cancer
4 -- 0Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic. Fast characterization of segmental duplication structure in multiple genome assemblies
5 -- 0Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov. Space-efficient representation of genomic k-mer count tables
6 -- 0Jason Fan, Skylar Chan, Rob Patro. Perplexity: evaluating transcript abundance estimation in the absence of ground truth
7 -- 0Patrick Kunzmann, Jacob Marcel Anter, Kay Hamacher. Adding hydrogen atoms to molecular models via fragment superimposition
8 -- 0Bertrand Marchand, Yann Ponty, Laurent Bulteau. Tree diet: reducing the treewidth to unlock FPT algorithms in RNA bioinformatics
9 -- 0Yoshiki Nakagawa, Satsuya Ohata, Kana Shimizu. Efficient privacy-preserving variable-length substring match for genome sequence
10 -- 0Peter F. Stadler, Sebastian Will. Bi-alignments with affine gaps costs
11 -- 0Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka 0002, Pawel Górecki 0001. Embedding gene trees into phylogenetic networks by conflict resolution algorithms
12 -- 0Spencer Krieger, John D. Kececioglu. Heuristic shortest hyperpaths in cell signaling hypergraphs
13 -- 0Yue Wang. Two metrics on rooted unordered trees with labels
14 -- 0Anuradha Wickramarachchi, Yu Lin 0001. Binning long reads in metagenomics datasets using composition and coverage information
15 -- 0Céline Scornavacca, Mathias Weller. Treewidth-based algorithms for the small parsimony problem on networks
16 -- 0Tom Davot, Annie Chateau, Rohan Fossé, Rodolphe Giroudeau, Mathias Weller. On a greedy approach for genome scaffolding
17 -- 0Spencer Krieger, John D. Kececioglu. Correction: Heuristic shortest hyperpaths in cell signaling hypergraphs