Journal: Algorithms for Molecular Biology

Volume 18, Issue 1

1 -- 0Shaili Mathur, Noah A. Rosenberg. All galls are divided into three or more parts: recursive enumeration of labeled histories for galled trees
2 -- 0Taher Mun, Vaddadi Naga Sai Kavya, Ben Langmead. Pangenomic genotyping with the marker array
3 -- 0Giulio Ermanno Pibiri. On weighted k-mer dictionaries
4 -- 0Mohammad Fili, Guiping Hu, Changze Han, Alexa Kort, John Trettin, Hillel Haim. A classification algorithm based on dynamic ensemble selection to predict mutational patterns of the envelope protein in HIV-infected patients
5 -- 0Sebastian S. Schmidt, Jarno N. Alanko. Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time
6 -- 0Baqiao Liu, Tandy J. Warnow. Weighted ASTRID: fast and accurate species trees from weighted internode distances
7 -- 0Ke Chen 0011, Mingfu Shao. Locality-sensitive bucketing functions for the edit distance
8 -- 0Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler. Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package
9 -- 0Mathieu Gascon, Nadia El-Mabrouk. On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer
10 -- 0Seong-Hwan Jun, Hassan Nasif, Chris Jennings-Shaffer, David H. Rich, Anna Kooperberg, Mathieu Fourment, Cheng Zhang, Marc A. Suchard, Frederick A. Matsen IV. A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm
11 -- 0Veronica Guerrini, Alessio Conte, Roberto Grossi, Gianni Liti, Giovanna Rosone, Lorenzo Tattini. phyBWT2: phylogeny reconstruction via eBWT positional clustering
12 -- 0Yifan Jin, Jonathan Terhorst. The solution surface of the Li-Stephens haplotype copying model
13 -- 0Giulia Bernardini 0001, Leo van Iersel, Esther Julien, Leen Stougie. Constructing phylogenetic networks via cherry picking and machine learning
14 -- 0Diego P. Rubert, MarĂ­lia D. V. Braga. Efficient gene orthology inference via large-scale rearrangements
15 -- 0Konstantinn Bonnet, Tobias Marschall, Daniel Doerr. Constructing founder sets under allelic and non-allelic homologous recombination
16 -- 0David Schaller 0001, Tom Hartmann, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth. Relative timing information and orthology in evolutionary scenarios
17 -- 0Eden Ozeri, Meirav Zehavi, Michal Ziv-Ukelson. New algorithms for structure informed genome rearrangement
18 -- 0Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Yann Ponty, Laurent Bulteau. Automated design of dynamic programming schemes for RNA folding with pseudoknots
19 -- 0Yunheng Han, Erin K. Molloy. Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model
20 -- 0Konstantinn Bonnet, Tobias Marschall, Daniel Doerr. Correction: Constructing founder sets under allelic and non-allelic homologous recombination
21 -- 0Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow. EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment