Journal: Briefings in Bioinformatics

Volume 14, Issue 2

129 -- 130Scott Markel, Richard Carter. Editorial
131 -- 143Jun Wang, Lei Kong, Ge Gao, Jingchu Luo. A brief introduction to web-based genome browsers
144 -- 161Robert M. Kuhn, David Haussler, W. James Kent. The UCSC genome browser and associated tools
162 -- 171Lincoln D. Stein. Using GBrowse 2.0 to visualize and share next-generation sequence data
172 -- 177Oscar Westesson, Mitchell Skinner, Ian Holmes. Visualizing next-generation sequencing data with JBrowse
178 -- 192Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
193 -- 202Iain Milne, Gordon Stephen, Micha Bayer, Peter J. A. Cock, Leighton Pritchard, Linda Cardle, Paul D. Shaw, David Marshall. Using Tablet for visual exploration of second-generation sequencing data
203 -- 212Tim Carver, Simon R. Harris, Thomas D. Otto, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan. BamView: visualizing and interpretation of next-generation sequencing read alignments
213 -- 224Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop. Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies
225 -- 237Federico Zambelli, Graziano Pesole, Giulio Pavesi. Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
238 -- 250Vivekanand Sharma, Indra Neil Sarkar. Bioinformatics opportunities for identification and study of medicinal plants
251 -- 260Rosanna Upstill-Goddard, Diana Eccles, Jörg Fliege, Andrew Collins. Machine learning approaches for the discovery of gene-gene interactions in disease data