Journal: Briefings in Bioinformatics

Volume 17, Issue 2

185 -- 192Jae-Yong Nam, Nayoung K. D. Kim, Sang-Cheol Kim, Je-Gun Joung, Ruibin Xi, Semin Lee, Peter J. Park, Woong-Yang Park. Evaluation of somatic copy number estimation tools for whole-exome sequencing data
193 -- 203Xiangxiang Zeng, Xuan Zhang, Quan Zou. Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks
204 -- 212Francesco Marabita, Paola de Candia, Anna Torri, Jesper Tegnér, Sergio Abrignani, Riccardo L. Rossi. Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR
213 -- 223Alicia Poplawski, Federico Marini, Moritz Hess, Tanja Zeller, Johanna Mazur, Harald Binder. Systematically evaluating interfaces for RNA-seq analysis from a life scientist perspective
224 -- 232Pan Zhang, David C. Samuels, Brian D. Lehmann, Thomas Stricker, Jennifer A. Pietenpol, Yu Shyr, Yan Guo. Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data
233 -- 242Lishuang Qi, Libin Chen, Yang Li, Yuan Qin, Rufei Pan, Wenyuan Zhao, Yunyan Gu, Hongwei Wang, Ruiping Wang, Xiangqi Chen, Zheng Guo. Critical limitations of prognostic signatures based on risk scores summarized from gene expression levels: a case study for resected stage I non-small-cell lung cancer
243 -- 248Xun Gu. Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates
249 -- 254Xun Gu. Understanding tissue expression evolution: from expression phylogeny to phylogenetic network
255 -- 261Monica Chagoyen, Juan A. García-Martín, Florencio Pazos. Practical analysis of specificity-determining residues in protein families
262 -- 269Sinjini Sikdar, Ryan Gill, Susmita Datta. Improving protein identification from tandem mass spectrometry data by one-step methods and integrating data from other platforms
270 -- 282Chen Li, Catherine Ching Han Chang, Jeremy Nagel, Benjamin T. Porebski, Morihiro Hayashida, Tatsuya Akutsu, Jiangning Song, Ashley M. Buckle. in silico methods for prediction of coiled-coil domains in proteins
283 -- 292Wynand Alkema, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum. Microbial bioinformatics for food safety and production
293 -- 308Damian Gola, Jestinah M. Mahachie John, Kristel Van Steen, Inke R. König. A roadmap to multifactor dimensionality reduction methods
309 -- 321Ahmed Mohamed, Canh Hao Nguyen, Hiroshi Mamitsuka. Current status and prospects of computational resources for natural product dereplication: a review
322 -- 335John C. Siavelis, Marilena M. Bourdakou, Emmanouil I. Athanasiadis, George M. Spyrou, Konstantina S. Nikita. Bioinformatics methods in drug repurposing for Alzheimer's disease
336 -- 345Maria K. Jaakkola, Laura L. Elo. Empirical comparison of structure-based pathway methods
346 -- 351Steven N. Hart, Patrick H. Duffy, Daniel J. Quest, Asif Hossain, Michael A. Meiners, Jean-Pierre A. Kocher. VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files
352 -- 366Enrico Glaab. Building a virtual ligand screening pipeline using free software: a survey