Journal: Briefings in Bioinformatics

Volume 17, Issue 5

733 -- 744Yoli Shavit, Ivan Merelli, Luciano Milanesi, Pietro Liò. How computer science can help in understanding the 3D genome architecture
745 -- 757Vladimir B. Teif. Nucleosome positioning: resources and tools online
758 -- 770Cristian Andrés Gallo, Rocío L. Cecchini, Jessica Andrea Carballido, Sandra Micheletto, Ignacio Ponzoni. Discretization of gene expression data revised
771 -- 785Haleh Yasrebi. Comparative study of joint analysis of microarray gene expression data in survival prediction and risk assessment of breast cancer patients
786 -- 795Ashley Cacho, Ekaterina Smirnova, Snehalata Huzurbazar, Xinping Cui. A Comparison of Base-calling Algorithms for Illumina Sequencing Technology
796 -- 807Hans-Ulrich Klein, Katja Hebestreit. An evaluation of methods to test predefined genomic regions for differential methylation in bisulfite sequencing data
808 -- 818Rosa J. Meijer, Jelle J. Goeman. Multiple Testing of Gene Sets from Gene Ontology: Possibilities and Pitfalls
819 -- 830Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier. The digital revolution in phenotyping
831 -- 840Ian Walsh, Gianluca Pollastri, Silvio C. E. Tosatto. Correct machine learning on protein sequences: a peer-reviewing perspective
841 -- 862Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini. Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment
863 -- 876Denise Gameiro, Martín Pérez-Pérez, Gael Pérez Rodríguez, Gonçalo Monteiro, Nuno F. Azevedo, Anália Lourenço. Computational resources and strategies to construct single-molecule metabolic models of microbial cells
877 -- 890Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi. Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
891 -- 901Rachel Cavill, Danyel Jennen, Jos Kleinjans, Jacob J. Briedé. Transcriptomic and metabolomic data integration