Journal: Briefings in Bioinformatics

Volume 5, Issue 4

312 -- 0Alan J. Bleasby. Editorial: Stable funding for open source software?
313 -- 327Jan Ihmels, Sven Bergmann. Challenges and prospects in the analysis of large-scale gene expression data
328 -- 338Zheng Rong Yang. Biological applications of support vector machines
339 -- 349Jamie Stevens. Computational aspects of host-parasite phylogenies
350 -- 354Sonia Cattley. A review of bioinformatics degrees in Australia
355 -- 364Jakob C. Mueller. Linkage disequilibrium for different scales and applications
365 -- 369Lisa J. Mullan. Genomes, genomes everywhere - but where to browse?
378 -- 388Guoqing Lu, Etsuko N. Moriyama. Vector NTI, a balanced all-in-one sequence analysis suite
389 -- 390Yossi Rosenberg, Ron Unger. The Made-In-Israel Bioinformatics Portal

Volume 5, Issue 3

216 -- 0Martin Bishop. Editorial
217 -- 236Giulio Pavesi, Giancarlo Mauri, Graziano Pesole. In silico representation and discovery of transcription factor binding sites
237 -- 248Mihai Pop, Adam Phillippy, Arthur L. Delcher, Steven Salzberg. Comparative genome assembly
249 -- 258Shintaro Katayama, Mutsumi Kanamori, Yoshihide Hayashizaki. Integrated analysis of the genome and the transcriptome by FANTOM
259 -- 269Corrado Priami, Paola Quaglia. Modelling the dynamics of biosystems
270 -- 283Johannes J. Mandel, Niall M. Palfreyman, Jesús A. López, Werner Dubitzky. Representing bioinformatics causality
284 -- 286Lisa J. Mullan. We are gathered here today - EST cluster databases

Volume 5, Issue 2

104 -- 106Charlie Hodgman. Editorial: The informatics of post-translational modification and its implications for systems biology
107 -- 117Christian Schönbach. From masking repeats to identifying functional repeats in the mouse transcriptome
118 -- 130Rajeev K. Azad, Mark Borodovsky. Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory
131 -- 149Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin. Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes
150 -- 163Sudhir Kumar, Koichiro Tamura, Masatoshi Nei. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
164 -- 178Claus-Wilhelm von der Lieth, Andreas Bohne-Lang, Klaus Karl Lohmann, Martin Frank. Bioinformatics for glycomics: Status, methods, requirements and perspectives
179 -- 192Lesheng Kong, Shoba Ranganathan. Delineation of modular proteins: Domain boundary prediction from sequence information
193 -- 195Lisa J. Mullan. Jemboss reloaded
196 -- 203I. King Jordan. Abstracts
204 -- 0Josiah Altschuler, Marilyn Safran, Doron Lancet, Lakshmanan Iyer. News section

Volume 5, Issue 1

4 -- 0Russ B. Altman. Editorial: Building successful biological databases
9 -- 22Selina S. Dwight, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, Shuai Weng, David Botstein, J. Michael Cherry. Saccharomyces genome database: Underlying principles and organisation
23 -- 30Philip E. Bourne, John D. Westbrook, Helen M. Berman. The Protein Data Bank and lessons in data management
31 -- 38Ewan Birney, Michele E. Clamp. Biological database design and implementation
39 -- 58Amos Bairoch, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger. Swiss-Prot: Juggling between evolution and stability
59 -- 70Tim Clark, Sean Martin, Ted Liefeld. Globally distributed object identification for biological knowledgebases
71 -- 74Lisa J. Mullan. Tutorial section: Domains and motifs - proteins in bite-sized chunks
75 -- 81I. King Jordan. Abstracts
88 -- 92Paul Grosu, Eitan Rubin, Jaime Prilusky, Lakshmanan Iyer. News section