Journal: Bioinformatics

Volume 21, Issue 3

277 -- 0. Protein Refinement: A New Challenge For Casp In Its 10th Anniversary
278 -- 281Graham J. Etherington, Jo L. Dicks, Ian N. Roberts. Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination
282 -- 292Andrew E. Firth, Chris M. Brown. Detecting overlapping coding sequences with pairwise alignments
293 -- 306Daniel H. Haft, Jeremy D. Selengut, Lauren M. Brinkac, Nikhat Zafar, Owen White. Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
307 -- 313Dustin E. Schones, Pavel Sumazin, Michael Q. Zhang. Similarity of position frequency matrices for transcription factor binding sites
314 -- 324Haiquan Li, Jinyan Li. Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets
325 -- 332Anders Anderssonn, Rolf Bernander, Peter Nilsson. Dual-genome primer design for construction of DNA microarrays
333 -- 337Juan M. Gonzalez, Johannes Zimmermann, Cesareo Saiz-Jimenez. Evaluating putative chimeric sequences from PCR-amplified products
338 -- 348Luca Ferrarini, Luca Bertelli, Jacob Feala, Andrew D. McCulloch, Giovanni Paternostro. A more efficient search strategy for aging genes based on connectivity
349 -- 356Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild. A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
357 -- 363Antti Pettinen, Tommi Aho, Olli-Pekka Smolander, Tiina Manninen, Antti Saarinen, Kaisa-Leena Taattola, Olli Yli-Harja, Marja-Leena Linne. Simulation tools for biochemical networks: evaluation of performance and usability
364 -- 378Vicente Arnau, Sergio Mars, Ignacio MarĂ­n. Iterative Cluster Analysis of Protein Interaction Data
379 -- 384Carla Kuiken, Karina Yusim, Laura Boykin, Russell Richardson. The Los Alamos hepatitis C sequence database
385 -- 387Stefan Weckx, Peter De Rijk, Christine Van Broeckhoven, Jurgen Del-Favero. SNPbox: a modular software package for large-scale primer design
388 -- 389Madelaine Marchin, Paul T. Kelly, Jianwen Fang. Tracker: continuous HMMER and BLAST searching
390 -- 392C. J. Creevey, James O. McInerney. Clann: investigating phylogenetic information through supertree analyses
393 -- 395Paolo Fontana, Eckart Bindewald, Stefano Toppo, Riccardo Velasco, Giorgio Valle, Silvio C. E. Tosatto. The SSEA server for protein secondary structure alignment
396 -- 398Tomaz Curk, Janez Demsar, Qikai Xu, Gregor Leban, Uros Petrovic, Ivan Bratko, Gad Shaulsky, Blaz Zupan. Microarray data mining with visual programming
399 -- 401Xiaoyun Tang, Lishuang Shen, Julie A. Dickerson. BarleyExpress: a web-based submission tool for enriched microarray database annotations
402 -- 404Eric W. Price, Ignazio Carbone. SNAP: workbench management tool for evolutionary population genetic analysis
405 -- 407Tom H. Lindner, Katrin Hoffmann. easyLINKAGE: a PERL script for easy and automated two-/multi-point linkage analyses
408 -- 409Ian Bradford, Robin Winter, Carl Evans, Jonathan Bard. Human-CMouse Gene Searcher: a tool to assist discovery of malformation-associated genes by using phenotype databases
410 -- 412Robert D. Finn, Mhairi Marshall, Alex Bateman. iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions
413 -- 414Gregor Leban, Ivan Bratko, Uros Petrovic, Tomaz Curk, Blaz Zupan. VizRank: finding informative data projections in functional genomics by machine learning
415 -- 417Daniel Shegogue, W. Jim Zheng. Capturing biological information with class?Cresponsibility?Ccollaboration cards
418 -- 420Abdullah Kahraman, Andrey Avramov, Lyubomir G. Nashev, Dimitar Popov, Rainer Ternes, Hans-Dieter Pohlenz, Bertram Weiss. PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics