Journal: Bioinformatics

Volume 22, Issue 11

1289 -- 1292Emmanuelle Becker, Vincent Meyer, Hocine Madaoui, Raphaël Guérois. Detection of a tandem BRCT in Nbs1 and Xrs2 with functional implications in the DNA damage response
1293 -- 1296Ute Müller, Günther Ernst, Christian Melle, Reinhard Guthke, Ferdinand von Eggeling. Convergence of the proteomic pattern in cancer
1297 -- 1301Kira S. Makarova, Eugene V. Koonin, Robert Haselkorn, Michael Y. Galperin. Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion
1302 -- 1307Florencia G. Leonardi. A generalization of the PST algorithm: modeling the sparse nature of protein sequences
1308 -- 1316Stephen McCauley, Jotun Hein. Using hidden Markov models and observed evolution to annotate viral genomes
1317 -- 1324Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov, Mikhail A. Roytberg. Analysis of internal loops within the RNA secondary structure in almost quadratic time
1325 -- 1334Malik Yousef, Michael Nebozhyn, Hagit Shatkay, Stathis Kanterakis, Louise C. Showe, Michael K. Showe. Combining multi-species genomic data for microRNA identification using a Naïve Bayes classifier
1335 -- 1342Nicholas J. Burgoyne, Richard M. Jackson. Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces
1343 -- 1352Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov. A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly
1353 -- 1358Konrad H. Paszkiewicz, Michael J. E. Sternberg, Michael Lappe. Prediction of viable circular permutants using a graph theoretic approach
1359 -- 1366Gaëlle Lelandais, Pierre Vincens, Anne Badel-Chagnon, Stéphane Vialette, Claude Jacq, Serge A. Hazout. Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms
1367 -- 1374Xue-wen Chen, Gopalakrishna Anantha, Xinkun Wang. An effective structure learning method for constructing gene networks
1375 -- 1382Chao-Ping Hsu, Pei-Hsuan Lee, Ching-Wei Chang, Cheng-Tsung Lee. Constructing quantitative models from qualitative mutant phenotypes: preferences in selecting sensory organ precursors
1383 -- 1390Jacob Köhler, Jan Baumbach, Jan Taubert, Michael Specht, Andre Skusa, Alexander Rüegg, Christopher J. Rawlings, Paul Verrier, Stephan Philippi. Graph-based analysis and visualization of experimental results with ONDEX
1391 -- 1396David P. De Souza, Eleanor C. Saunders, Malcolm J. McConville, Vladimir A. Likic. Progressive peak clustering in GC-MS Metabolomic experiments applied to ::::Leishmania:::: parasites
1397 -- 1398Christian X. Weichenberger, Manfred J. Sippl. NQ-Flipper: validation and correction of asparagine/glutamine amide rotamers in protein crystal structures
1399 -- 1401David L. Aylor, Eric W. Price, Ignazio Carbone. SNAP: Combine and Map modules for multilocus population genetic analysis
1402 -- 1403Claire Bardel, Vincent Danjean, Emmanuelle Génin. ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees
1404 -- 1405Mario Falchi, Cesare Cappio Borlino. PowQ: a user-friendly package for the design of variance component multipoint linkage analysis studies
1406 -- 1407Rainer Machné, Andrew Finney, Stefan Müller, James Lu, Stefanie Widder, Christoph Flamm. The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks
1408 -- 1409Vladimir Makarenkov, Dmytro Kevorkov, Pablo Zentilli, Andrei V. Gagarin, Nathalie Malo, Robert Nadon. HTS-Corrector: software for the statistical analysis and correction of experimental high-throughput screening data
1410 -- 1411Hyunsoo Kim, Gene H. Golub, Haesun Park. Missing value estimation for DNA microarray gene expression data: local least squares imputation
1412 -- 0Jeffrey T. Leek, Eva Monsen, Alan R. Dabney, John D. Storey. EDGE: extraction and analysis of differential gene expression