Journal: Bioinformatics

Volume 22, Issue 6

643 -- 644Udo Hahn, Alfonso Valencia. Semantic Mining in Biomedicine ::::(Introduction to the papers selected from the SMBM 2005 Symposium, Hinxton, U.K., April 2005)::::
645 -- 650Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork. Extraction of regulatory gene/protein networks from Medline
651 -- 657Ted Sandler, Andrew I. Schein, Lyle H. Ungar. Automatic term list generation for entity tagging
658 -- 664Patrick Ruch. Automatic assignment of biomedical categories: toward a generic approach
665 -- 670Jin-Bok Lee, Jung-jae Kim, Jong C. Park. Automatic extension of Gene Ontology with flexible identification of candidate terms
671 -- 675Elizabeta Bab-Dinitz, Hagay Shmuely, Julie Maupin-Furlow, Jerry Eichler, Boaz Shaanan. ::::Haloferax volcanii:::: PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
676 -- 684Valentina Boeva, Mireille Régnier, Dmitri A. Papatsenko, Vsevolod Makeev. Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
685 -- 691Chia-Jung Chang, Yao-Ting Huang, Kun-Mao Chao. A greedier approach for finding tag SNPs
692 -- 698Xiang Shao, Valery Shepelev, Alexei Fedorov. Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans
699 -- 707Joanna C. Chiu, Ernest K. Lee, Mary G. Egan, Indra Neil Sarkar, Gloria M. Coruzzi, Robert DeSalle. OrthologID: automation of genome-scale ortholog identification within a parsimony framework
708 -- 715Daniele Catanzaro, Raffaele Pesenti, Michel C. Milinkovitch. A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model
716 -- 722Tanja Gesell, Arndt von Haeseler. ::::In silico:::: sequence evolution with site-specific interactions along phylogenetic trees
723 -- 730Benjamin J. Polacco, Patricia C. Babbitt. Automated discovery of 3D motifs for protein function annotation
731 -- 738Kristin Missal, Michael A. Cross, Dirk Drasdo. Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment
739 -- 746Chiara Sabatti, Gareth M. James. Bayesian sparse hidden components analysis for transcription regulation networks
747 -- 754Zheng Li, Stephen M. Shaw, Matthew J. Yedwabnick, Christina Chan. Using a state-space model with hidden variables to infer transcription factor activities
755 -- 761Zuyi Wang, Yue Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, Eric P. Hoffman. Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data
762 -- 764Wolfgang Gerlach, Robert Giegerich. GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing
765 -- 767Jonathon Blake, Christian Schwager, Misha Kapushesky, Alvis Brazma. ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression
768 -- 770Mary K. Kuhner. LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters
771 -- 772Alun Thomas, Nicola J. Camp. Maximum likelihood estimates of allele frequencies and error rates from samples of related individuals by gene counting
773 -- 774Euan A. Adie, Richard R. Adams, Kathryn L. Evans, David J. Porteous, Ben S. Pickard. SUSPECTS: enabling fast and effective prioritization of positional candidates