Journal: Bioinformatics

Volume 22, Issue 7

775 -- 778Marialuisa Pellegrini-Calace, Anna Tramontano. Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches
779 -- 788Raja Jothi, Elena Zotenko, Asba Tasneem, Teresa M. Przytycka. COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations
789 -- 794Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee. Comparison of Affymetrix GeneChip expression measures
795 -- 801Wei Pan. Incorporating gene functions as priors in model-based clustering of microarray gene expression data
802 -- 807H. P. Piepho, B. Keller, N. Hoecker, F. Hochholdinger. Combining signals from spotted cDNA microarrays obtained at different scanning intensities
808 -- 814Jinwook Seo, Heather Gordish-Dressman, Eric P. Hoffman. An interactive power analysis tool for microarray hypothesis testing and generation
815 -- 822Mukesh Bansal, Giusy Della Gatta, Diego di Bernardo. Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
823 -- 829Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein. Predicting interactions in protein networks by completing defective cliques
830 -- 836Zafer Barutçuoglu, Robert E. Schapire, Olga G. Troyanskaya. Hierarchical multi-label prediction of gene function
837 -- 842Ashish Choudhary, Marcel Brun, Jianping Hua, James Lowey, Edward Suh, Edward R. Dougherty. Genetic test bed for feature selection
843 -- 848Kazumi Hakamada, Masahiro Okamoto, Taizo Hanai. Novel technique for preprocessing high dimensional time-course data from DNA microarray: mathematical model-based clustering
849 -- 856Céline Rouveirol, Nicolas Stransky, Philippe Hupé, Philippe La Rosa, Eric Viara, Emmanuel Barillot, François Radvanyi. Computation of recurrent minimal genomic alterations from array-CGH data
857 -- 865Parantu K. Shah, Peer Bork. LSAT: learning about alternative transcripts in MEDLINE
866 -- 873Patricia L. Whetzel, Helen E. Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris J. Taylor 0002, Joseph White, Christian J. Stoeckert Jr.. The MGED Ontology: a resource for semantics-based description of microarray experiments
874 -- 882Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters. Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application
883 -- 884E. Ryder, R. Jackson, A. Ferguson-Smith, S. Russell. MAMMOT - a set of tools for the design, management and visualization of genomic tiling arrays
885 -- 886Payan Canaran, Lincoln Stein, Doreen Ware. Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support
887 -- 888Weizhong Li, Adam Godzik. VISSA: a program to visualize structural features from structure sequence alignment
889 -- 890Michael Sammeth, Thasso Griebel, Felix Tille, Jens Stoye. ::::Panta rhei:::: (QAlign2): an open graphical environment for sequence analysis
891 -- 893Avner Schlessinger, Guy Yachdav, Burkhard Rost. PROFbval: predict flexible and rigid residues in proteins
894 -- 896Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu. CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS)
897 -- 899James M. Wettenhall, Ken M. Simpson, Keith Satterley, Gordon K. Smyth. affylmGUI: a graphical user interface for linear modeling of single channel microarray data
900 -- 901Sébastien Carrère, Jérôme Gouzy. REMORA: a pilot in the ocean of BioMoby web-services
902 -- 903Pedro Cipriano Feijão, Lissiene Silva Neiva, Ana Maria Lima de Azeredo-Espin, Ana Cláudia Lessinger. AMiGA: the arthropodan mitochondrial genomes accessible database