Journal: Bioinformatics

Volume 23, Issue 11

1309 -- 1312Niels Grabe, Karsten Neuber. Simulating psoriasis by altering transit amplifying cells
1313 -- 1320Edmund S. Jackson, William J. Fitzgerald. A sequential Monte Carlo EM approach to the transcription factor binding site identification problem
1321 -- 1330Stanley Ng Kwang Loong, Santosh K. Mishra. De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
1331 -- 1338Shuoyong Shi, Yi Zhong, Indraneel Majumdar, S. Sri Krishna, Nick V. Grishin. Searching for three-dimensional secondary structural patterns in proteins with ProSMoS
1339 -- 1347Xiuwen Zheng, Hung-Chung Huang, Wenyuan Li, Peng Liu, Quan-Zhen Li, Ying Liu. Modeling nonlinearity in dilution design microarray data
1348 -- 1355George Vasmatzis, Eric W. Klee, Dagmar M. Kube, Terry M. Therneau, Farhad Kosari. Quantitating tissue specificity of human genes to facilitate biomarker discovery
1356 -- 1362Daniel M. Kemp, N. R. Nirmala, Joseph D. Szustakowski. Extending the pathway analysis framework with a test for transcriptional variance implicates novel pathway modulation during myogenic differentiation
1363 -- 1370Ian A. Wood, Peter M. Visscher, Kerrie L. Mengersen. Classification based upon gene expression data: bias and precision of error rates
1371 -- 1377Filippo Castiglione, Karen Duca, Abdul Salam Jarrah, Reinhard C. Laubenbacher, Donna Hochberg, David Thorley-Lawson. Simulating Epstein-Barr virus infection with C-ImmSim
1378 -- 1385Ralf Steuer, Adriano Nunes Nesi, Alisdair R. Fernie, Thilo Gross, Bernd Blasius, Joachim Selbig. From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle
1386 -- 1393Alexander V. Alekseyenko, Christopher J. Lee. Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases
1394 -- 1400Peicheng Du, Rajagopalan Sudha, Michael B. Prystowsky, Ruth Hogue Angeletti. Data reduction of isotope-resolved LC-MS spectra
1401 -- 1409Martin Sköld, Tobias Rydén, Viktoria Samuelsson, Charlotte Bratt, Lars Ekblad, Håkan Olsson, Bo Baldetorp. Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry
1410 -- 1417Hagit Shatkay, Annette Höglund, Scott Brady, Torsten Blum, Pierre Dönnes, Oliver Kohlbacher. SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data
1418 -- 1423Ewa Urbanczyk-Wochniak, Lloyd W. Sumner. MedicCyc: a biochemical pathway database for ::::Medicago truncatula::::
1424 -- 1426Nathan Day, Andrew Hemmaplardh, Robert Thurman, John A. Stamatoyannopoulos, William Stafford Noble. Unsupervised segmentation of continuous genomic data
1427 -- 1428Reed A. Cartwright. Ngila: global pairwise alignments with logarithmic and affine gap costs
1429 -- 1430Michal J. Pietal, Irina Tuszynska, Janusz M. Bujnicki. PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure
1431 -- 1433Joachim L. Schultze, Daniela Eggle. IlluminaGUI: Graphical User Interface for analyzing gene expression data generated on the Illumina platform
1434 -- 1436Patrick R. Leary, David P. Remsen, Catherine N. Norton, David J. Patterson, Indra Neil Sarkar. uBioRSS: Tracking taxonomic literature using RSS
1437 -- 1439Maxim V. Shapovalov, Adrian A. Canutescu, Roland L. Dunbrack Jr.. BioDownloader: bioinformatics downloads and updates in a few clicks