| 2031 | -- | 2037 | Wendy S. W. Wong, Rasmus Nielsen. Finding ::::cis::::-regulatory modules in ::::Drosophila:::: using phylogenetic hidden Markov models |
| 2038 | -- | 2045 | Alessio Ceroni, Fabrizio Costa, Paolo Frasconi. Classification of small molecules by two- and three-dimensional decomposition kernels |
| 2046 | -- | 2053 | Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi. POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions |
| 2054 | -- | 2062 | Eva Freyhult, Vincent Moulton, Peter Clote. Boltzmann probability of RNA structural neighbors and riboswitch detection |
| 2063 | -- | 2072 | Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona. Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data |
| 2073 | -- | 2079 | Yiyong Zhou, Corentin Cras-Méneur, Mitsuru Ohsugi, Gary D. Stormo, M. Alan Permutt. A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments |
| 2080 | -- | 2087 | H. M. Bøvelstad, S. Nygård, H. L. Størvold, Magne Aldrin, Ø. Borgan, Arnoldo Frigessi, Ole Christian Lingjærde. Predicting survival from microarray data - a comparative study |
| 2088 | -- | 2095 | Yonghong Wang, Ze-Hong Miao, Yves Pommier, Ernest S. Kawasaki, Audrey Player. Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips |
| 2096 | -- | 2103 | Laura Elo, Henna Järvenpää, Matej Oresic, Riitta Lahesmaa, Tero Aittokallio. Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process |
| 2104 | -- | 2112 | James J. Chen, Taewon Lee, Robert R. Delongchamp, Tao Chen, Chen-An Tsai. Significance analysis of groups of genes in expression profiling studies |
| 2113 | -- | 2120 | Brett A. McKinney, David M. Reif, Bill C. White, James E. Crowe Jr., Jason H. Moore. Evaporative cooling feature selection for genotypic data involving interactions |
| 2121 | -- | 2128 | Zheng Guo, Yongjin Li, Xue Gong, Chen Yao, Wencai Ma, Dong Wang, Yanhui Li, Jing Zhu, Min Zhang, Da Yang, Jing Wang. Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network |
| 2129 | -- | 2138 | Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa. The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs) |
| 2139 | -- | 2146 | Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter. Constraint-based functional similarity of metabolic genes: going beyond network topology |
| 2147 | -- | 2154 | Minca Mramor, Gregor Leban, Janez Demsar, Blaz Zupan. Visualization-based cancer microarray data classification analysis |
| 2155 | -- | 2162 | Kyu-Won Kim, Hun-Ki Chung, Gyu-Taek Cho, Kyung-Ho Ma, Dorothy Chandrabalan, Jae-Gyun Gwag, Tae-San Kim, Eun-Gi Cho, Yong-Jin Park. PowerCore: a program applying the advanced M strategy with a heuristic search for establishing core sets |
| 2163 | -- | 2173 | Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein. Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications |
| 2174 | -- | 2177 | Long Yang, Gulei Jin, Xiangqian Zhao, Yan Zheng, Zhaohua Xu, Weiren Wu. PIP: a database of potential intron polymorphism markers |
| 2178 | -- | 2179 | François Enault, Romain Fremez, Eric Baranowski, Thomas Faraut. Alvira: comparative genomics of viral strains |
| 2180 | -- | 2182 | Adrian Schneider, Christophe Dessimoz, Gaston H. Gonnet. OMA Browser - Exploring orthologous relations across 352 complete genomes |
| 2183 | -- | 2184 | Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré. beadarray: R classes and methods for Illumina bead-based data |
| 2185 | -- | 2187 | Manhong Dai, Pinglang Wang, Elvis Jakupovic, Stanley J. Watson, Fan Meng. Web-based GeneChip analysis system for large-scale collaborative projects |
| 2188 | -- | 2189 | Clément Rezvoy, Delphine Charif, Laurent Gueguen, Gabriel A. B. Marais. MareyMap: an R-based tool with graphical interface for estimating recombination rates |
| 2190 | -- | 2192 | Jason M. Laramie, Jemma B. Wilk, Anita L. DeStefano, Richard H. Myers. HaploBuild: an algorithm to construct non-contiguous associated haplotypes in family based genetic studies |
| 2193 | -- | 2195 | Lukasz Salwínski, David Eisenberg. The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins |
| 2196 | -- | 2197 | Marti A. Hearst, Anna Divoli, Harendra Guturu, Alex Ksikes, Preslav Nakov, Michael A. Wooldridge, Jerry Ye. BioText Search Engine: beyond abstract search |
| 2198 | -- | 2200 | John Day-Richter, Midori A. Harris, Melissa Haendel, Suzanna Lewis. OBO-Edit - an ontology editor for biologists |
| 2201 | -- | 0 | George Nicola, Ilya A. Vakser. A simple shape characteristic of protein-protein recognition |
| 2202 | -- | 0 | Ross P. Carlson. Metabolic systems cost-benefit analysis for interpreting network structure and regulation - Erratum |