Journal: Bioinformatics

Volume 23, Issue 18

2353 -- 2360Adam James Reid, Corin Yeats, Christine A. Orengo. Methods of remote homology detection can be combined to increase coverage by 10 in the midnight zone
2361 -- 2367Andreas Heger, Swapan Mallick, Christopher Andrew Wilton, Liisa Holm. The global trace graph, a novel paradigm for searching protein sequence databases
2368 -- 2375Xiu-Feng Wan, Guorong Chen, Feng Luo, Michael Emch, Ruben O. Donis. A quantitative genotype algorithm reflecting H5N1 Avian influenza niches
2376 -- 2384Avner Schlessinger, Marco Punta, Burkhard Rost. Natively unstructured regions in proteins identified from contact predictions
2385 -- 2390Hongfang Liu, Barry Zeeberg, Gang Qu, Akif Günes Koru, Alessandro Ferrucci, Ari B. Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, John N. Weinstein. AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets
2391 -- 2398Jianqing Fan, Yue Niu. Selection and validation of normalization methods for c-DNA microarrays using within-array replications
2399 -- 2406Yun Joo Yoo, Jianming Tang, Richard A. Kaslow, Kui Zhang. Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns
2407 -- 2414Mohamed Elati, Pierre Neuvial, Monique Bolotin-Fukuhara, Emmanuel Barillot, François Radvanyi, Céline Rouveirol. LICORN: learning cooperative regulation networks from gene expression data
2415 -- 2422Grégory Batt, Boyan Yordanov, Ron Weiss, Calin Belta. Robustness analysis and tuning of synthetic gene networks
2423 -- 2432Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter J. Woolf, Yongqun He. miniTUBA: medical inference by network integration of temporal data using Bayesian analysis
2433 -- 2440Jeongah Yoon, Yaguang Si, Ryan Nolan, Kyongbum Lee. Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection
2441 -- 2448Jaroslaw Harezlak, Mike Wang, David Christiani, Xihong Lin. Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments
2449 -- 2454Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li. An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization
2455 -- 2462Hiroto Saigo, Takeaki Uno, Koji Tsuda. Mining complex genotypic features for predicting HIV-1 drug resistance
2463 -- 2469Jian Huang, Arief Gusnanto, Kathleen O Sullivan, Johan Staaf, Åke Borg, Yudi Pawitan. Robust smooth segmentation approach for array CGH data analysis
2470 -- 2476Youjuan Li, Ji Zhu. Analysis of array CGH data for cancer studies using fused quantile regression
2477 -- 2484Weijian Xuan, Pinglang Wang, Stanley J. Watson, Fan Meng. Medline search engine for finding genetic markers with biological significance
2485 -- 2487Gerton Lunter. HMMoC - a compiler for hidden Markov models
2488 -- 2490Andrija Tomovic, Edward J. Oakeley. Quality estimation of multiple sequence alignments by Bayesian hypothesis testing
2491 -- 2492Jo-Lan Chung, John E. Beaver, Eric D. Scheeff, Philip E. Bourne. Con-Struct Map: a comparative contact map analysis tool
2493 -- 2494Chris Harbron, Kai-Ming Chang, Marie C. South. RefPlus: an R package extending the RMA Algorithm
2495 -- 2497Juan Hernandez-Toro, Carlos Prieto, Javier De Las Rivas. APID2NET: unified interactome graphic analyzer
2498 -- 2500Supawadee Ingsriswang, Eakasit Pacharawongsakda. sMOL Explorer: an open source, web-enabled database and exploration tool for Small MOLecules datasets
2501 -- 2503Hongseok Yun, Jeong Wook Lee, Joonwoo Jeong, Jaesung Chung, Jong Myoung Park, Han Na Myoung, Sang Yup Lee. EcoProDB: the Escherichia coli protein database
2504 -- 2506C. Voegele, S. V. Tavtigian, D. de Silva, S. Cuber, A. Thomas, F. Le Calvez-Kelm. A Laboratory Information Management System (LIMS) for a high throughput genetic platform aimed at candidate gene mutation screening