| 3265 | -- | 3275 | Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen. Modeling the adaptive immune system: predictions and simulations |
| 3276 | -- | 3279 | Orly Noivirt-Brik, Ron Unger, Amnon Horovitz. Low folding propensity and high translation efficiency distinguish ::::in vivo:::: substrates of GroEL from other ::::Escherichia coli:::: proteins |
| 3280 | -- | 3288 | Robin Nunkesser, Thorsten Bernholt, Holger Schwender, Katja Ickstadt, Ingo Wegener. Detecting high-order interactions of single nucleotide polymorphisms using genetic programming |
| 3289 | -- | 3296 | Shu Wang, Robin Ray Gutell, Daniel P. Miranker. Biclustering as a method for RNA local multiple sequence alignment |
| 3297 | -- | 3303 | Holger Dinkel, Heinrich Sticht. A computational strategy for the prediction of functional linear peptide motifs in proteins |
| 3304 | -- | 3311 | Stinus Lindgreen, Paul P. Gardner, Anders Krogh. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing |
| 3312 | -- | 3319 | Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel J. Fleishman, Nir Ben-Tal, Dmitrij Frishman. Co-evolving residues in membrane proteins |
| 3320 | -- | 3327 | Mohammad Tabrez Anwar Shamim, Mohammad Anwaruddin, Hampapathalu A. Nagarajaram. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs |
| 3328 | -- | 3334 | Mark M. Gosink, Howard T. Petrie, Nicholas F. Tsinoremas. Electronically subtracting expression patterns from a mixed cell population |
| 3335 | -- | 3342 | Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif. Hierarchical tree snipping: clustering guided by prior knowledge |
| 3343 | -- | 3349 | Roy Varshavsky, Assaf Gottlieb, David Horn, Michal Linial. Unsupervised feature selection under perturbations: meeting the challenges of biological data |
| 3350 | -- | 3355 | Filippo Castiglione, Francesco Pappalardo, Massimo Bernaschi, Santo Motta. Optimization of HAART with genetic algorithms and agent-based models of HIV infection |
| 3356 | -- | 3363 | Yves Fomekong-Nanfack, Jaap A. Kaandorp, Joke G. Blom. Efficient parameter estimation for spatio-temporal models of pattern formation: case study of ::::Drosophila melanogaster:::: |
| 3364 | -- | 3373 | Hon Nian Chua, Wing-Kin Sung, Limsoon Wong. An efficient strategy for extensive integration of diverse biological data for protein function prediction |
| 3374 | -- | 3381 | Chung-Chih Lin, Yuh-Show Tsai, Yu-Shi Lin, Tai-Yu Chiu, Chia-Cheng Hsiung, May-I. Lee, Jeremy C. Simpson, Chun-Nan Hsu. Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization |
| 3382 | -- | 3383 | Volker Hollich, Erik L. L. Sonnhammer. PfamAlyzer: domain-centric homology search |
| 3384 | -- | 3385 | Thomas Laubach, Arndt von Haeseler. TreeSnatcher: coding trees from images |
| 3386 | -- | 3387 | Sanbo Qin, Huan-Xiang Zhou. meta-PPISP: a meta web server for protein-protein interaction site prediction |
| 3388 | -- | 3390 | D. Fusco, B. Bassetti, P. Jona, M. Cosentino Lagomarsino. DIA-MCIS: an importance sampling network randomizer for network motif discovery and other topological observables in transcription networks |
| 3391 | -- | 3393 | Jose-Roman Bilbao-Castro, Inmaculada García, José-Jesús Fernández. EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography |
| 3394 | -- | 3396 | Ted Laderas, Cory Bystrom, Debra McMillen, Guang Fan, Shannon K. McWeeney. ::::TandTRAQ::::: an open-source tool for integrated protein identification and quantitation |
| 3397 | -- | 3399 | Surendra S. Negi, Catherine H. Schein, Numan Özgün, Trevor D. Power, Werner Braun. InterProSurf: a web server for predicting interacting sites on protein surfaces |
| 3400 | -- | 3402 | Min Hu, Junhui Wang, Qunsheng Peng. Identification and visualization of cage-shaped proteins |
| 3403 | -- | 3405 | Lukasz Slabinski, Lukasz Jaroszewski, Leszek Rychlewski, Ian A. Wilson, Scott A. Lesley, Adam Godzik. XtalPred: a web server for prediction of protein crystallizability |
| 3406 | -- | 3408 | Remo Sanges, Francesca Cordero, Raffaele Calogero. oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language |
| 3409 | -- | 3411 | Andre S. Ribeiro, Daniel A. Charlebois, Jason Lloyd-Price. ::::CellLine::::, a stochastic cell lineage simulator |
| 3412 | -- | 3414 | Jean Peccoud, Tod Courtney, William H. Sanders. Möbius: an integrated discrete-event modeling environment |