Journal: Bioinformatics

Volume 23, Issue 6

657 -- 663E. S. Venkatraman, Adam B. Olshen. A faster circular binary segmentation algorithm for the analysis of array CGH data
664 -- 672Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead. Deleterious SNP prediction: be mindful of your training data!
673 -- 679Arthur L. Delcher, Kirsten A. Bratke, Edwin C. Powers, Steven Salzberg. Identifying bacterial genes and endosymbiont DNA with Glimmer
680 -- 686Joan Hérisson, Guillaume Payen, Rachid Gherbi. A 3D pattern matching algorithm for DNA sequences
687 -- 693Kai Ye, Walter A. Kosters, Adriaan P. IJzerman. An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences
694 -- 700Andrzej K. Brodzik. Quaternionic periodicity transform: an algebraic solution to the tandem repeat detection problem
701 -- 708Yungki Park, Volkhard Helms. On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins
709 -- 716Ahmet Sacan, Ozgur Ozturk, Hakan Ferhatosmanoglu, Yusu Wang. LFM-Pro: a tool for detecting significant local structural sites in proteins
717 -- 723Evgeny B. Krissinel. On the relationship between sequence and structure similarities in proteomics
724 -- 731István A. Bogdán, Daniel Coca, Jenny Rivers, Robert J. Beynon. Hardware acceleration of processing of mass spectrometric data for proteomics
732 -- 738Shigeyuki Matsui, Masaaki Ito, Hiroyuki Nishiyama, Hajime Uno, Hirokazu Kotani, Jun Watanabe, Parry Guilford, Anthony Reeve, Masanori Fukushima, Osamu Ogawa. Genomic characterization of multiple clinical phenotypes of cancer using multivariate linear regression models
739 -- 746Peng Liu, J. T. Gene Hwang. Quick calculation for sample size while controlling false discovery rate with application to microarray analysis
747 -- 754Dong Hua, Yinglei Lai. An ensemble approach to microarray data-based gene prioritization after missing value imputation
755 -- 763Yanxin Shi, Tom Mitchell, Ziv Bar-Joseph. Inferring pairwise regulatory relationships from multiple time series datasets
764 -- 766Shengyin Gu, Iain Anderson, Victor Kunin, Michael J. Cipriano, Simon Minovitsky, Gunther H. Weber, Nina Amenta, Bernd Hamann, Inna Dubchak. TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities
767 -- 768Rafael Navajas-Pérez, Cristina Rubio-Escudero, José Luis Aznarte, Manuel Ruiz Rejón, Manuel A. Garrido-Ramos. SatDNA Analyzer: a computing tool for satellite-DNA evolutionary analysis
769 -- 770Raik Grünberg, Michael Nilges, Johan Leckner. Biskit - A software platform for structural bioinformatics
771 -- 773Charles Girardot, Oleg Sklyar, Sophie Grosz, Wolfgang Huber, Eileen E. M. Furlong. CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data
774 -- 776Augustin Luna, Kristin K. Nicodemus. snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package
777 -- 779Andre S. Ribeiro, Jason Lloyd-Price. SGN Sim, a Stochastic Genetic Networks Simulator
780 -- 782Young C. Song, Edward Kawas, Benjamin M. Good, Mark D. Wilkinson, Scott J. Tebbutt. DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs
783 -- 784Jean-Pierre Gauthier, Fabrice Legeai, Alain Zasadzinski, Claude Rispe, Denis Tagu. AphidBase: a database for aphid genomic resources