| 1 | -- | 5 | Andreas S. Richter, Christian Schleberger, Rolf Backofen, Claudia Steglich. Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1 |
| 6 | -- | 14 | Bart P. P. van Houte, Jaap Heringa. Accurate confidence aware clustering of array CGH tumor profiles |
| 15 | -- | 21 | Shuangge Ma, Yawei Zhang, Jian Huang, Xuesong Han, Theodore Holford, Qing Lan, Nathaniel Rothman, Peter Boyle, Tongzhang Zheng. Identification of non-Hodgkin s lymphoma prognosis signatures using the CTGDR method |
| 22 | -- | 29 | Youngik Yang, Donald Gilbert, Sun Kim. Annotation confidence score for genome annotation: a genome comparison approach |
| 30 | -- | 37 | Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu. Predictive rule inference for epistatic interaction detection in genome-wide association studies |
| 38 | -- | 45 | Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson. The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing |
| 46 | -- | 52 | Jian Yu, Yong Zhou, Isao Tanaka, Min Yao. Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere |
| 53 | -- | 60 | Guillaume Bouvier, Nathalie Evrard-Todeschi, Jean-Pierre Girault, Gildas Bertho. Automatic clustering of docking poses in virtual screening process using self-organizing map |
| 61 | -- | 67 | Robert A. Forties, Ralf Bundschuh. Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure |
| 68 | -- | 76 | Mohammadmahdi R. Yousefi, Jianping Hua, Chao Sima, Edward R. Dougherty. Reporting bias when using real data sets to analyze classification performance |
| 77 | -- | 83 | Marc Kirchner, Bernhard Y. Renard, Ullrich Köthe, Darryl J. Pappin, Fred A. Hamprecht, Hanno Steen, Judith A. J. Steen. Computational protein profile similarity screening for quantitative mass spectrometry experiments |
| 84 | -- | 90 | Axel Rasche, Ralf Herwig. ARH: predicting splice variants from genome-wide data with modified entropy |
| 91 | -- | 97 | Stefano Volinia, Rosa Visone, Marco Galasso, Elda Rossi, Carlo Maria Croce. Identification of microRNA activity by Targets Reverse EXpression |
| 98 | -- | 103 | Brian Carrillo, Corey Yanofsky, Sylvie Laboissiere, Robert Nadon, Robert E. Kearney. Methods for combining peptide intensities to estimate relative protein abundance |
| 104 | -- | 110 | Tina Toni, Michael P. H. Stumpf. Simulation-based model selection for dynamical systems in systems and population biology |
| 111 | -- | 119 | Yun Niu, David Otasek, Igor Jurisica. Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I:::2:::D |
| 120 | -- | 122 | Troy Zerr, Gregory M. Cooper, Evan E. Eichler, Deborah Nickerson. Targeted interrogation of copy number variation using SCIMMkit |
| 123 | -- | 124 | Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling. MicroRazerS: rapid alignment of small RNA reads |
| 125 | -- | 126 | Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub. NGSView: an extensible open source editor for next-generation sequencing data |
| 127 | -- | 129 | Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster. inGAP: an integrated next-generation genome analysis pipeline |
| 130 | -- | 131 | Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette. Ancestors 1.0: a web server for ancestral sequence reconstruction |
| 132 | -- | 133 | Andrew L. Hipp, Marcial Escudero. MATICCE: mapping transitions in continuous character evolution |
| 134 | -- | 135 | Joshua Buckner, Justin Wilson, Mark Seligman, Brian D. Athey, Stanley J. Watson, Fan Meng. The gputools package enables GPU computing in R |
| 136 | -- | 138 | Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data |
| 139 | -- | 140 | Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth. (no title) |
| 141 | -- | 142 | Jie Zheng, David Zhang, Pawel F. Przytycki, Rafal Zielinski, Jacek Capala, Teresa M. Przytycka. SimBoolNet - a Cytoscape plugin for dynamic simulation of signaling networks |
| 143 | -- | 144 | Ben D. MacArthur, Alexander Lachmann, Ihor Lemischka, Avi Ma ayan. GATE: software for the analysis and visualization of high-dimensional time series expression data |
| 145 | -- | 146 | Wei Yu, Melinda Clyne, Muin J. Khoury, Marta Gwinn. Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations |
| 147 | -- | 148 | Martijn J. Schuemie, Ning Kang, Maarten L. Hekkelman, Jan A. Kors. GeneE: Gene and protein query expansion with disambiguation |