Journal: Bioinformatics

Volume 26, Issue 8

991 -- 0Alex Bateman. Curators of the world unite: the International Society of Biocuration
992 -- 995David Golan, Carmit Levy, Brad Friedman, Noam Shomron. Biased hosting of intronic microRNA genes
996 -- 999Inbal Yomtovian, Nuttinee Teerakulkittipong, Byungkook Lee, John Moult, Ron Unger. Composition bias and the origin of ORFan genes
1000 -- 1006Frank Johannes, René Wardenaar, Maria Colomé-Tatché, Florence Mousson, Petra de Graaf, Michal Mokry, Victor Guryev, H. Th. Marc Timmers, Edwin Cuppen, Ritsert C. Jansen. Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq
1007 -- 1014Gerard Wong, Christopher Leckie, Kylie L. Gorringe, Izhak Haviv, Ian G. Campbell, Adam Kowalczyk. Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations
1015 -- 1021Eduardo Corel, Florian Pitschi, Burkhard Morgenstern. A ::::min-cut:::: algorithm for the consistency problem in multiple sequence alignment
1022 -- 1028Wei-Yao Chou, Wei-I Chou, Tun-Wen Pai, Shu-Chuan Lin, Ting-Ying Jiang, Chuan Yi Tang, Margaret Dah-Tsyr Chang. Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules
1029 -- 1035Nawar Malhis, Steven J. M. Jones. High quality SNP calling using Illumina data at shallow coverage
1036 -- 1042Hugo Willy, Fushan Song, Zeyar Aung, See-Kiong Ng, Wing-Kin Sung. SLiM on Diet: finding short linear motifs on domain interaction interfaces in Protein Data Bank
1043 -- 1049Jennifer Clarke, Pearl Seo, Bertrand Clarke. Statistical expression deconvolution from mixed tissue samples
1050 -- 1056Sonja Zehetmayer, Martin Posch. ::::Post hoc:::: power estimation in large-scale multiple testing problems
1057 -- 1063Saket Navlakha, Carl Kingsford. The power of protein interaction networks for associating genes with diseases
1064 -- 1072Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano. Inferring dynamic gene networks under varying conditions for transcriptomic network comparison
1073 -- 1081Yuichi Shiraishi, Shuhei Kimura, Mariko Okada. Inferring cluster-based networks from differently stimulated multiple time-course gene expression data
1082 -- 1090Amin Moghaddas Gholami, Kurt Fellenberg. Cross-species common regulatory network inference without requirement for prior gene affiliation
1091 -- 1097Lei Qu, Hanchuan Peng. A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems
1098 -- 1104Daniel Dahlmeier, Hwee Tou Ng. Domain adaptation for semantic role labeling in the biomedical domain
1105 -- 1111Peng Jiang, Mona Singh. SPICi: a fast clustering algorithm for large biological networks
1112 -- 1118James Malone, Ele Holloway, Tomasz Adamusiak, Misha Kapushesky, Jie Zheng, Nikolay Kolesnikov, Anna Zhukova, Alvis Brazma, Helen E. Parkinson. Modeling sample variables with an Experimental Factor Ontology
1119 -- 1121Matthieu Muffato, Alexandra Louis, Charles-Edouard Poisnel, Hugues Roest Crollius. Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes
1122 -- 1124Chris Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi Vishwanath Revanna, Qunfeng Dong. An Ergatis-based prokaryotic genome annotation web server
1125 -- 1126François Chevenet, Olivier Croce, Maxime Hebrard, Richard Christen, Vincent Berry. ScripTree: scripting phylogenetic graphics
1127 -- 1128Sébastien Loriot, Frédéric Cazals, Julie Bernauer. ESBTL: efficient PDB parser and data structure for the structural and geometric analysis of biological macromolecules
1129 -- 1130Daniela Beisser, Gunnar W. Klau, Thomas Dandekar, Tobias Müller, Marcus T. Dittrich. BioNet: an R-Package for the functional analysis of biological networks
1131 -- 1132David C. Trudgian, Benjamin Thomas, Simon J. McGowan, Benedikt M. Kessler, Mogjiborahman Salek, Oreste Acuto. CPFP: a central proteomics facilities pipeline
1133 -- 1134Nobuhiko Tanaka, Kazunori Waki, Hideki Kaneda, Tomohiro Suzuki, Ikuko Yamada, Tamio Furuse, Kimio Kobayashi, Hiromi Motegi, Hideaki Toki, Maki Inoue, Osamu Minowa, Tetsuo Noda, Keizo Takao, Tsuyoshi Miyakawa, Aki Takahashi, Tsuyoshi Koide, Shigeharu Wakana, Hiroshi Masuya. SDOP-DB: a comparative standardized-protocol database for mouse phenotypic analyses