| 1455 | -- | 1461 | Leena Salmela, Jan Schröder. Correcting errors in short reads by multiple alignments |
| 1462 | -- | 1465 | Gibran Hemani, Athanasios Theocharidis, Wenhua Wei, Chris S. Haley. EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards |
| 1466 | -- | 1472 | Mirjana Domazet-Loso, Bernhard Haubold. Alignment-free detection of local similarity among viral and bacterial genomes |
| 1473 | -- | 1480 | Guoqiang Yu, Bai Zhang, G. Steven Bova, Jianfeng Xu, Ie-Ming Shih, Yue Wang. BACOM: ::::in silico:::: detection of genomic deletion types and correction of normal cell contamination in copy number data |
| 1481 | -- | 1488 | Andrew McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab Shah, Colin Collins, Süleyman Cenk Sahinalp. Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data |
| 1489 | -- | 1495 | Henry C. M. Leung, Siu-Ming Yiu, Bin Yang, Yu Peng, Yi Wang, Zhihua Liu, Jing-Chi Chen, Junjie Qin, Ruiqiang Li, Francis Y. L. Chin. A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio |
| 1496 | -- | 1505 | Andrew E. Teschendorff, Joanna Zhuang, Martin Widschwendter. Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies |
| 1506 | -- | 1512 | Bin Wang, Xiao Feng Wang, Yaguang Xi. Normalizing bead-based microRNA expression data: a measurement error model-based approach |
| 1513 | -- | 1520 | Dan He, Farhad Hormozdiari, Nicholas A. Furlotte, Eleazar Eskin. Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions |
| 1521 | -- | 1528 | Qianghu Wang, Jie Sun, Meng Zhou, Haixiu Yang, Yan Li, Xiang Li, Sali Lv, Xia Li, Yixue Li. A novel network-based method for measuring the functional relationship between gene sets |
| 1529 | -- | 1536 | Markus Maucher, Barbara Kracher, Michael Kühl, Hans A. Kestler. Inferring Boolean network structure via correlation |
| 1537 | -- | 1545 | Fangping Mu, Clifford J. Unkefer, Pat J. Unkefer, William S. Hlavacek. Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds |
| 1546 | -- | 1554 | Kai Christian Bader, Christian Grothoff, Harald Meier. Comprehensive and relaxed search for oligonucleotide signatures in hierarchically clustered sequence datasets |
| 1555 | -- | 1561 | Teo Shu Mei, Yudi Pawitan, Vikrant Kumar, Anbupalam Thalamuthu, Mark Seielstad, Kee Seng Chia, Agus Salim. Multi-platform segmentation for joint detection of copy number variants |
| 1562 | -- | 1568 | Ward Blondé, Vladimir Mironov, Aravind Venkatesan, Erick Antezana, Bernard De Baets, Martin Kuiper. Reasoning with bio-ontologies: using relational closure rules to enable practical querying |
| 1569 | -- | 1570 | Cenny Taslim, Tim Hui-Ming Huang, Shili Lin. DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models |
| 1571 | -- | 1572 | Felix Krueger, Simon R. Andrews. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications |
| 1573 | -- | 1574 | Corinna Vehlow, Henning Stehr, Matthias Winkelmann, Jose M. Duarte, Lars Petzold, Juliane Dinse, Michael Lappe. CMView: Interactive contact map visualization and analysis |
| 1575 | -- | 1577 | Ahmet Bakan, Lidio M. Meireles, Ivet Bahar. ::::ProDy::::: Protein Dynamics Inferred from Theory and Experiments |
| 1578 | -- | 1580 | Tian Xia, John L. Van Hemert, Julie A. Dickerson. CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling |
| 1581 | -- | 1582 | Deguo Xia, Haoran Zheng, Zhiqiang Liu, Guisheng Li, Jinlong Li, Jiong Hong, Kai Zhao. MRSD: a web server for Metabolic Route Search and Design |
| 1583 | -- | 1584 | Ahmet Emre Aladag, Cesim Erten, Melih Sözdinler. Reliability-Oriented bioinformatic networks visualization |
| 1585 | -- | 1586 | Ambarish Biswas, Raghuraj Rao, Shivshankar Umashankar, Kalyan C. Mynampati, Sheela Reuben, Gauri Parab, Sanjay Swarup. datPAV - an online processing, analysis and visualization tool for exploratory investigation of experimental data |
| 1587 | -- | 1588 | Pieter Audenaert, Thomas Van Parys, Florian Brondel, Mario Pickavet, Piet Demeester, Yves Van de Peer, Tom Michoel. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks |
| 1589 | -- | 1590 | Soumya Raychaudhuri. VIZ-GRAIL: visualizing functional connections across disease loci |
| 1591 | -- | 1593 | Masao Nagasaki, Ayumu Saito, André Fujita, Georg Tremmel, Kazuko Ueno, Emi Ikeda, Euna Jeong, Satoru Miyano. Systems biology model repository for macrophage pathway simulation |