| 2027 | -- | 2030 | Ofer Isakov, Shira Modai, Noam Shomron. Pathogen detection using short-RNA deep sequencing subtraction and assembly |
| 2031 | -- | 2037 | Yong Lin, Jian Li, Hui Shen, Lei Zhang, Christopher J. Papasian, Hong-Wen Deng. Comparative studies of ::::de novo:::: assembly tools for next-generation sequencing technologies |
| 2038 | -- | 2046 | Adam B. Olshen, Henrik Bengtsson, Pierre Neuvial, Paul T. Spellman, Richard A. Olshen, Venkatraman E. Seshan. Parent-specific copy number in paired tumor-normal studies using circular binary segmentation |
| 2047 | -- | 2053 | Vikas Bansal, Ondrej Libiger. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data |
| 2054 | -- | 2061 | Rui Yan, Paul C. Boutros, Igor Jurisica. A tree-based approach for motif discovery and sequence classification |
| 2062 | -- | 2067 | Shu-An Chen, Yu-Yen Ou, Tzong-Yi Lee, M. Michael Gromiha. Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties |
| 2068 | -- | 2075 | Simon A. Berger, Alexandros Stamatakis. Aligning short reads to reference alignments and trees |
| 2076 | -- | 2082 | Yuedong Yang, Eshel Faraggi, Huiying Zhao, Yaoqi Zhou. Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates |
| 2083 | -- | 2088 | Zengming Zhang, Yu Li, Biaoyang Lin, Michael Schroeder, Bingding Huang. Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction |
| 2089 | -- | 2097 | Martin Sill, Sebastian Kaiser, Axel Benner, Annette Kopp-Schneider. Robust biclustering by sparse singular value decomposition incorporating stability selection |
| 2098 | -- | 2103 | Stan Pounds, Cuilan Lani Gao, Robert A. Johnson, Karen D. Wright, Helen Poppleton, David Finkelstein, Sarah E. S. Leary, Richard J. Gilbertson. A procedure to statistically evaluate agreement of differential expression for cross-species genomics |
| 2104 | -- | 2111 | Harm-Jan Westra, Ritsert C. Jansen, Rudolf S. N. Fehrmann, Gerard J. te Meerman, David van Heel, Cisca Wijmenga, Lude Franke. MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects |
| 2112 | -- | 2118 | Todd L. Edwards, Zhuo Song, Chun Li. Enriching targeted sequencing experiments for rare disease alleles |
| 2119 | -- | 2126 | Shujie Ma, Lijian Yang, Roberto Romero, Yuehua Cui. Varying coefficient model for gene-environment interaction: a non-linear look |
| 2127 | -- | 2133 | Luca Beltrame, Enrica Calura, Razvan R. Popovici, Lisa Rizzetto, Damariz Rivero Guedez, Michele Donato, Chiara Romualdi, Sorin Draghici, Duccio Cavalieri. The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways |
| 2134 | -- | 2140 | Oleg Paliy, Brent D. Foy. Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays |
| 2141 | -- | 2143 | Rong She, Jeffrey Shih-Chieh Chu, Bora Uyar, Jun Wang, Ke Wang, Nansheng Chen. genBlastG: using BLAST searches to build homologous gene models |
| 2144 | -- | 2146 | Joseph K. Pickrell, Daniel J. Gaffney, Yoav Gilad, Jonathan K. Pritchard. False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions |
| 2147 | -- | 2148 | Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin. CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer |
| 2149 | -- | 2150 | Oscar Flores, Modesto Orozco. nucleR: a package for non-parametric nucleosome positioning |
| 2151 | -- | 2152 | Thomas K. F. Wong, Kwok-Lung Wan, Bay-Yuan Hsu, Brenda W. Y. Cheung, Wing-Kai Hon, Tak Wah Lam, Siu-Ming Yiu. RNASAlign: RNA Structural Alignment System |
| 2153 | -- | 2155 | Aurelien Ginolhac, Morten Rasmussen, M. Thomas P. Gilbert, Eske Willerslev, Ludovic Orlando. mapDamage: testing for damage patterns in ancient DNA sequences |
| 2156 | -- | 2158 | Petr Danecek, Adam Auton, Gonçalo R. Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert E. Handsaker, Gerton Lunter, Gabor T. Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin. The variant call format and VCFtools |
| 2159 | -- | 2160 | Luca Pireddu, Simone Leo, Gianluigi Zanetti. SEAL: a distributed short read mapping and duplicate removal tool |
| 2161 | -- | 2162 | Mark Moll, Drew H. Bryant, Lydia E. Kavraki. The LabelHash Server and Tools for substructure-based functional annotation |
| 2163 | -- | 2164 | Abdullah Kahraman, Lars Malmström, Ruedi Aebersold. Xwalk: computing and visualizing distances in cross-linking experiments |
| 2165 | -- | 2166 | Augustin Luna, Margot Sunshine, Martijn P. van Iersel, Mirit I. Aladjem, Kurt W. Kohn. PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs) |
| 2167 | -- | 2168 | Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka. JSBML: a flexible Java library for working with SBML |
| 2169 | -- | 2170 | Xin-Yuan Song, Zhao-Hua Lu. Response to Comments on Bayesian variable selection for disease classification using gene expression data |
| 2171 | -- | 0 | Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma, Inge Jonassen. Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim |