| 3221 | -- | 3227 | Chao Cheng, Renqiang Min, Mark Gerstein. TIP: A probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles |
| 3228 | -- | 3234 | Jin Zhang, Yufeng Wu. SVseq: an approach for detecting exact breakpoints of deletions with low-coverage sequence data |
| 3235 | -- | 3241 | Geir Kjetil Sandve, Egil Ferkingstad, Ståle Nygård. Sequential Monte Carlo multiple testing |
| 3242 | -- | 3249 | Zhenqiu Liu, William Hsiao, Brandi L. Cantarel, Elliott Franco Drábek, Claire Fraser-Liggett. Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data |
| 3250 | -- | 3258 | Siavash Mirarab, Tandy Warnow. FASTSP: linear time calculation of alignment accuracy |
| 3259 | -- | 3265 | Leena Salmela, Veli Mäkinen, Niko Välimäki, Johannes Ylinen, Esko Ukkonen. Fast scaffolding with small independent mixed integer programs |
| 3266 | -- | 3275 | Minmei Hou, Ping Yao, Angela Antonou, Mitrick A. Johns. Pico-inplace-inversions between human and chimpanzee |
| 3276 | -- | 3285 | Peter Schmidtke, Axel Bidon-Chanal, F. Javier Luque, Xavier Barril. MDpocket: open-source cavity detection and characterization on molecular dynamics trajectories |
| 3286 | -- | 3292 | Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben-Tal. Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site |
| 3293 | -- | 3299 | Shuiwang Ji. Computational network analysis of the anatomical and genetic organizations in the mouse brain |
| 3300 | -- | 3305 | A. Sofia Silva, Shona H. Wood, Sipko van Dam, Sven Berres, Anne McArdle, João Pedro de Magalhães. Gathering insights on disease etiology from gene expression profiles of healthy tissues |
| 3306 | -- | 3312 | Aurélie Névéol, W. John Wilbur, Zhiyong Lu. Extraction of data deposition statements from the literature: a method for automatically tracking research results |
| 3313 | -- | 3314 | Michal Wozniak, Limsoon Wong, Jerzy Tiuryn. CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains |
| 3315 | -- | 3316 | Alex Stivala, Michael Wybrow, Anthony Wirth, James C. Whisstock, Peter J. Stuckey. Automatic generation of protein structure cartoons with Pro-origami |
| 3317 | -- | 3318 | Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte. ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression |
| 3319 | -- | 3320 | Sudhir Kumar, Charlotte Konikoff, Bernard Van Emden, Christopher Busick, Kailah T. Davis, Shuiwang Ji, Lin-Wei Wu, Hector Ramos, Thomas Brody, Sethuraman Panchanathan, Jieping Ye, Timothy L. Karr, Kristyn Gerold, Michael McCutchan, Stuart J. Newfeld. Drosophila embryogenesis |
| 3321 | -- | 3322 | Donglin Huang, Yiling Huang, Youhuang Bai, Dijun Chen, Ralf Hofestädt, Christian Klukas, Ming Chen 0005. MyBioNet: interactively visualize, edit and merge biological networks on the Web |
| 3323 | -- | 3324 | Jonathan Blakes, Jamie Twycross, Francisco José Romero-Campero, Natalio Krasnogor. in silico modelling platform for Systems and Synthetic Biology |
| 3325 | -- | 3326 | Assaf Gottlieb, Oded Magger, Igor Berman, Eytan Ruppin, Roded Sharan. PRINCIPLE: a tool for associating genes with diseases via network propagation |
| 3327 | -- | 3328 | Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vassilis J. Promponas. BioTextQuest: a web-based biomedical text mining suite for concept discovery |
| 3329 | -- | 3330 | Qingqing Yang, Chengxiang Qiu, Jie Yang, Qing Wu, Qinghua Cui. miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes |