Journal: Bioinformatics

Volume 29, Issue 15

1843 -- 1850Orion J. Buske, AshokKumar Manickaraj, Seema Mital, Peter N. Ray, Michael Brudno. Identification of deleterious synonymous variants in human genomes
1851 -- 1857Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe. Gene-set analysis is severely biased when applied to genome-wide methylation data
1858 -- 1864Michael S. Porter, Robert G. Beiko. SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles
1865 -- 1871Jaeil Ahn, Ying Yuan, Giovanni Parmigiani, Milind B. Suraokar, Lixia Diao, Ignacio I. Wistuba, Wenyi Wang. DeMix: deconvolution for mixed cancer transcriptomes using raw measured data
1872 -- 1878Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan. Network2Canvas: network visualization on a canvas with enrichment analysis
1879 -- 1887Ching-Wei Wang, Hsiang-Chou Chen. Improved image alignment method in application to X-ray images and biological images
1888 -- 1889Nicholas B. Larson, Brooke L. Fridley. PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data
1890 -- 1892Graham J. Etherington, Daniel MacLean. SVGenes: a library for rendering genomic features in scalable vector graphic format
1893 -- 1894Alexei Nordell Markovits, Charles Joly Beauparlant, Dominique Toupin, Shengrui Wang, Arnaud Droit, Nicolas Gevry. NGS++: a library for rapid prototyping of epigenomics software tools
1895 -- 1897Fabian A. Buske, Denis C. Bauer, John S. Mattick, Timothy L. Bailey. Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci
1898 -- 1899Ka-Kyung Kim, Juyoung Ham, Sung Wook Chi. miRTCat: a comprehensive map of human and mouse microRNA target sites including non-canonical nucleation bulges
1900 -- 1901Jirí Hon, Tomás Martínek, Kamil Rajdl, Matej Lexa. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences
1902 -- 1903Mick Watson, Esther Schnettler, Alain Kohl. viRome: an R package for the visualization and analysis of viral small RNA sequence datasets
1904 -- 1907Varun Jaiswal, Sree K. Chanumolu, Pankaj Sharma, Rajinder S. Chauhan, Chittaranjan Rout. EpiCombFlu: exploring known influenza epitopes and their combination to design a universal influenza vaccine
1908 -- 1909Shawn E. Yost, Hakan Alakus, Hiroko Matsui, Richard B. Schwab, Kristen Jepsen, Kelly A. Frazer, Olivier Harismendy. Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing
1910 -- 1912Xueping Liu, Ingo Vogt, Tanzeem Haque, Mónica Campillos. HitPick: a web server for hit identification and target prediction of chemical screenings
1913 -- 1914Eduardo P. Costa, Gerben Menschaert, Walter Luyten, Kurt De Grave, Jan Ramon. PIUS: peptide identification by unbiased search
1915 -- 1916Tiago Nunes, David Campos, Sérgio Matos, José Luís Oliveira. BeCAS: biomedical concept recognition services and visualization
1917 -- 1918Jindan Zhou, Andrew J. Richardson, Kenneth E. Rudd. EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes
1919 -- 1921Rafael C. Jimenez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane Loveland, Christine Mayer, Jennifer McDowall, Federico Moran, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider 0002, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas. iAnn: an event sharing platform for the life sciences
1919 -- 1921Rafael C. Jimenez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane Loveland, Christine Mayer, Jennifer McDowall, Federico Moran, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider 0002, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas. iAnn: an event sharing platform for the life sciences
1922 -- 1924Raymond K. Auerbach, Bin Chen, Atul J. Butte. Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool