Journal: Bioinformatics

Volume 30, Issue 5

597 -- 600Balamurugan Palanisamy, Rajasekaran Ekambaram, Klaus Heese. Plasmodium falciparum 3D7
601 -- 605Douglas D. Baumann, Rebecca W. Doerge. Robust adjustment of sequence tag abundance
606 -- 613Franziska Zickmann, Martin S. Lindner, Bernhard Y. Renard. GIIRA - RNA-Seq driven gene finding incorporating ambiguous reads
614 -- 620Jiajie Zhang, Kassian Kobert, Tomás Flouri, Alexandros Stamatakis. PEAR: a fast and accurate Illumina Paired-End reAd mergeR
621 -- 628Yue Li, Anna Goldenberg, Ka Chun Wong, Zhaolei Zhang. A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information
629 -- 635Luis M. Rodriguez-R, Konstantinos T. Konstantinidis. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
636 -- 643Matthew Levinson, Qing Zhou. A penalized Bayesian approach to predicting sparse protein-DNA binding landscapes
644 -- 651Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin Collins, Evan E. Eichler, Süleyman Cenk Sahinalp. ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms
652 -- 659Hongseok Tae, Dong-Yun Kim, John McCormick, Robert E. Settlage, Harold R. Garner. Discretized Gaussian mixture for genotyping of microsatellite loci containing homopolymer runs
660 -- 667Dong Xu, Lukasz Jaroszewski, Zhanwen Li, Adam Godzik. FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking
668 -- 674Giuseppe Maccari, Giulia L. B. Spampinato, Valentina Tozzini. SecStAnT: secondary structure analysis tool for data selection, statistics and models building
675 -- 681Ben-teng, Ting Huang, Zengyou He. Decoy-free protein-level false discovery rate estimation
682 -- 689David A. Liebner, Kun Huang, Jeffrey D. Parvin. MMAD: microarray microdissection with analysis of differences is a computational tool for deconvoluting cell type-specific contributions from tissue samples
690 -- 697Marina Evangelou, Frank Dudbridge, Lorenz Wernisch. Two novel pathway analysis methods based on a hierarchical model
698 -- 705Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Sarah A. Pendergrass, Marylyn D. Ritchie. ATHENA: the analysis tool for heritable and environmental network associations
706 -- 711Tomomi Ichimiya, Shoko Nishihara, Sayaka Takase-Yoden, Hiroshi Kida, Kiyoko F. Aoki-Kinoshita. Frequent glycan structure mining of influenza virus data revealed a sulfated glycan motif that increased viral infection
712 -- 718Joseph Geraci, Moyez Dharsee, Paulo A. S. Nuin, Alexandria Haslehurst, Madhuri Koti, Harriet E. Feilotter, Ken Evans. Exploring high dimensional data with Butterfly: a novel classification algorithm based on discrete dynamical systems
719 -- 725Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier. Mouse model phenotypes provide information about human drug targets
726 -- 733Johannes Stegmaier, Maryam Shahid, Masanari Takamiya, Lixin Yang, Sepand Rastegar, Markus Reischl, Uwe Strähle, Ralf Mikut. Automated prior knowledge-based quantification of neuronal patterns in the spinal cord of zebrafish
734 -- 736Ole Kristian Ekseth, Martin Kuiper, Vladimir Mironov. orthAgogue: an agile tool for the rapid prediction of orthology relations
737 -- 739Haoqi Sun, Haiping Wang, Ruixin Zhu, Kailin Tang, Qin Gong, Juan Cui, Zhiwei Cao, Qi Liu. iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis
740 -- 742Sébastien Harispe, Sylvie Ranwez, Stefan Janaqi, Jacky Montmain. The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies
743 -- 745Eric C. Anderson, Thomas C. Ng. Comment on 'Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching'