1521 | -- | 1525 | Tobias Hamp, Burkhard Rost. More challenges for machine-learning protein interactions |
1526 | -- | 1535 | Keegan D. Korthauer, Christina Kendziorski. MADGiC: a model-based approach for identifying driver genes in cancer |
1536 | -- | 1543 | Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell. An integrative approach to predicting the functional effects of non-coding and coding sequence variation |
1544 | -- | 1552 | Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm. PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment |
1553 | -- | 1560 | Hongyi Xin, John Greth, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu. Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping |
1561 | -- | 1568 | Hisaki Ikebata, Ryo Yoshida. Repulsive parallel MCMC algorithm for discovering diverse motifs from large sequence sets |
1569 | -- | 1576 | Sebastian Deorowicz, Marek Kokot, Szymon Grabowski, Agnieszka Debudaj-Grabysz. k-mer counting |
1577 | -- | 1583 | Kouichi Kimura, Asako Koike. Ultrafast SNP analysis using the Burrows-Wheeler transform of short-read data |
1584 | -- | 1591 | Maria D. Chikina, Elena Zaslavsky, Stuart C. Sealfon. CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations |
1592 | -- | 1598 | Thomas Bleazard, Janine A. Lamb, Sam Griffiths-Jones. Bias in microRNA functional enrichment analysis |
1599 | -- | 1606 | Lukas Folkman, Yuedong Yang, Zhixiu Li, Bela Stantic, Abdul Sattar, Matthew E. Mort, David N. Cooper, Yunlong Liu, Yaoqi Zhou. DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels |
1607 | -- | 1613 | Qunyuan Zhang, Haley Abel, Alan Wells, Petra Lenzini, Felicia Gomez, Michael A. Province, Alan A. Templeton, George M. Weinstock, Nita H. Salzman, Ingrid B. Borecki. Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data |
1614 | -- | 1622 | Vân Anh Huynh-Thu, Guido Sanguinetti. Combining tree-based and dynamical systems for the inference of gene regulatory networks |
1623 | -- | 1631 | Kieran O'Neill, Nima Aghaeepour, Jeremy Parker, Donna Hogge, Aly Karsan, Bakul Dalal, Ryan R. Brinkman. Deep profiling of multitube flow cytometry data |
1632 | -- | 1639 | Darren Davis, Ömer Nebil Yaveroglu, Noël Malod-Dognin, Aleksandar Stojmirovic, Natasa Przulj. Topology-function conservation in protein-protein interaction networks |
1640 | -- | 1647 | Renaud Richardet, Jean-Cédric Chappelier, Martin Telefont, Sean Hill. Large-scale extraction of brain connectivity from the neuroscientific literature |
1648 | -- | 1654 | Deepak Nag Ayyala, Shili Lin. GrammR: graphical representation and modeling of count data with application in metagenomics |
1655 | -- | 1662 | Heidi Dowst, Benjamin Pew, Chris Watkins, Apollo Mcowiti, Jonathan Barney, Shijing Qu, Lauren B. Becnel. Acquire: an open-source comprehensive cancer biobanking system |
1663 | -- | 1664 | Wolfgang Kaisers, Heiner Schaal, Holger Schwender. rbamtools: an R interface to samtools enabling fast accumulative tabulation of splicing events over multiple RNA-seq samples |
1665 | -- | 1667 | Burkhard Steuernagel, Florian Jupe, Kamil Witek, Jonathan D. G. Jones, Brande B. H. Wulff. NLR-parser: rapid annotation of plant NLR complements |
1668 | -- | 1670 | Liguo Wang, Jinfu J. Nie, Jean-Pierre Kocher. PVAAS: identify variants associated with aberrant splicing from RNA-seq |
1671 | -- | 1673 | Guoli Ji, Lei Li, Qingshun Quinn Li, Xiangdong Wu, Jingyi Fu, Gong Chen, Xiaohui Wu. PASPA: a web server for mRNA poly(A) site predictions in plants and algae |
1674 | -- | 1676 | Dinghua Li, Chi-Man Liu, Ruibang Luo, Kunihiko Sadakane, Tak Wah Lam. de Bruijn graph |
1677 | -- | 1679 | Tom Druet, Michel Georges. LINKPHASE3: an improved pedigree-based phasing algorithm robust to genotyping and map errors |
1680 | -- | 1682 | Paul R. Staab, Sha Zhu, Dirk Metzler, Gerton Lunter. scrm: efficiently simulating long sequences using the approximated coalescent with recombination |
1683 | -- | 1685 | Israel Steinfeld, Roy Navon, Michael L. Creech, Zohar Yakhini, Anya Tsalenko. ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types |
1686 | -- | 1688 | Sara Aibar, Celia Fontanillo, Conrad Droste, Javier De Las Rivas. Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering |
1689 | -- | 1691 | Jing Peng, Xinyi Shi, Yiming Sun, Dongye Li, Baohui Liu, Fanjiang Kong, Xiaohui Yuan. QTLMiner: QTL database curation by mining tables in literature |
1692 | -- | 1694 | Pan Tong, Kevin R. Coombes, Faye M. Johnson, Lauren A. Byers, Lixia Diao, Diane D. Liu, J. Jack Lee, John V. Heymach, Jing Wang 0006. drexplorer: A tool to explore dose-response relationships and drug-drug interactions |
1695 | -- | 1697 | Mark Davies, Nathan Dedman, Anne Hersey, George Papadatos, Matthew D. Hall, Lourdes Cucurull-Sanchez, Phil Jeffrey, Samiul Hasan, Peter J. Eddershaw, John P. Overington. ADME SARfari: comparative genomics of drug metabolizing systems |
1698 | -- | 1700 | Jacinte Beerten, Joost J. J. van Durme, Rodrigo Gallardo, Emidio Capriotti, Louise Serpell, Frederic Rousseau, Joost Schymkowitz. WALTZ-DB: a benchmark database of amyloidogenic hexapeptides |