| 2083 | -- | 2088 | Yuta Narushima, Hiroko Kozuka-Hata, Kouhei Tsumoto, Jun-Ichiro Inoue, Masaaki Oyama. Quantitative phosphoproteomics-based molecular network description for high-resolution kinase-substrate interactome analysis |
| 2089 | -- | 2095 | Nowlan H. Freese, David C. Norris, Ann E. Loraine. Integrated genome browser: visual analytics platform for genomics |
| 2096 | -- | 2102 | Filipe G. Vieira, Anders Albrechtsen, Rasmus Nielsen. Estimating IBD tracts from low coverage NGS data |
| 2103 | -- | 2110 | Heng Li. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences |
| 2111 | -- | 2119 | Yann Christinat, Rafal Pawlowski, Wilhelm Krek. jSplice: a high-performance method for accurate prediction of alternative splicing events and its application to large-scale renal cancer transcriptome data |
| 2120 | -- | 2127 | Heeju Noh, Rudiyanto Gunawan. Inferring gene targets of drugs and chemical compounds from gene expression profiles |
| 2128 | -- | 2135 | Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan. Beta-Poisson model for single-cell RNA-seq data analyses |
| 2136 | -- | 2142 | André Lacour, David Ellinghaus, Stefan Schreiber, Andre Franke, Tim Becker. Haplotype synthesis analysis reveals functional variants underlying known genome-wide associated susceptibility loci |
| 2143 | -- | 2150 | Pei Chen, Rui Liu, Yongjun Li, Luonan Chen. Detecting critical state before phase transition of complex biological systems by hidden Markov model |
| 2151 | -- | 2158 | Jie Chen, Alfred O. Hero III, Indika Rajapakse. Spectral identification of topological domains |
| 2159 | -- | 2166 | Vincenzo Bonnici, Federico Busato, Giovanni Micale, Nicola Bombieri, Alfredo Pulvirenti, Rosalba Giugno. APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks |
| 2167 | -- | 2175 | Charles Blatti, Saurabh Sinha. Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks |
| 2176 | -- | 2183 | Chao Pang, David van Enckevort, Mark de Haan, Fleur Kelpin, Jonathan Jetten, Dennis Hendriksen, Tommy de Boer, Bart Charbon, Erwin Winder, K. Joeri van der Velde, Dany Doiron, Isabel Fortier, Hans Hillege, Morris A. Swertz. MOLGENIS/connect: a system for semi-automatic integration of heterogeneous phenotype data with applications in biobanks |
| 2184 | -- | 2192 | Ying-Ying Xu, Fan Yang, Hong-bin Shen. Incorporating organelle correlations into semi-supervised learning for protein subcellular localization prediction |
| 2193 | -- | 2195 | Anestis Touloumis, John C. Marioni, Simon Tavaré. HDTD: analyzing multi-tissue gene expression data |
| 2196 | -- | 2198 | Dongwon Lee. LS-GKM: a new gkm-SVM for large-scale datasets |
| 2199 | -- | 2201 | Andreas Bremges, Esther Singer, Tanja Woyke, Alexander Sczyrba. MeCorS: Metagenome-enabled error correction of single cell sequencing reads |
| 2202 | -- | 2204 | Birte Kehr, Páll Melsted. chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts |
| 2205 | -- | 2207 | Mahmoud Ghandi, Morteza Mohammad Noori, Narges Ghareghani, Dongwon Lee, Levi A. Garraway, Michael A. Beer. gkmSVM: an R package for gapped-kmer SVM |
| 2208 | -- | 2209 | Christopher J. R. Illingworth. SAMFIRE: multi-locus variant calling for time-resolved sequence data |
| 2210 | -- | 2212 | Elena Bushmanova, Dmitry Antipov, Alla Lapidus, Vladimir Suvorov, Andrey D. Prjibelski. de novo transcriptome assemblies |
| 2213 | -- | 2215 | Oz Solomon, Eran Eyal, Ninette Amariglio, Ron Unger, Gidi Rechavi. e23D: database and visualization of A-to-I RNA editing sites mapped to 3D protein structures |
| 2216 | -- | 2218 | Hui Liu, Tingjun Hou. CaFE: a tool for binding affinity prediction using end-point free energy methods |
| 2219 | -- | 2220 | Aaron Diaz, Siyuan J. Liu, Carmen Sandoval, Alex Pollen, Tom J. Nowakowski, Daniel A. Lim, Arnold Kriegstein. SCell: integrated analysis of single-cell RNA-seq data |
| 2221 | -- | 2223 | Xiao Huo, Sheng'en Hu, Chengchen Zhao, Yong Zhang. Dr.seq: a quality control and analysis pipeline for droplet sequencing |
| 2224 | -- | 2226 | Sophie Limou, Andrew M. Taverner, Cheryl A. Winkler. Ferret: a user-friendly Java tool to extract data from the 1000 Genomes Project |
| 2227 | -- | 2229 | Qian S. Zhang, Brian L. Browning, Sharon R. Browning. ASAFE: ancestry-specific allele frequency estimation |
| 2230 | -- | 2232 | Haiming Tang, Paul D. Thomas. PANTHER-PSEP: predicting disease-causing genetic variants using position-specific evolutionary preservation |
| 2233 | -- | 2235 | Alexander Lachmann, Federico M. Giorgi, Gonzalo López, Andrea Califano. ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information |
| 2236 | -- | 2238 | Núria Queralt-Rosinach, Janet Piñero, Àlex Bravo, Ferran Sanz, Laura I. Furlong. DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases |
| 2239 | -- | 2241 | Leonid Andronov, Yves Lutz, Jean-Luc Vonesch, Bruno P. Klaholz. SharpViSu: integrated analysis and segmentation of super-resolution microscopy data |
| 2242 | -- | 0 | Brendan O'Fallon. TreesimJ: a flexible, forward time population genetic simulator |