Journal: Bioinformatics

Volume 32, Issue 23

3535 -- 3542Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam. LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes
3543 -- 3551Tianshun Gao, Bing He, Sheng Liu, Heng Zhu, Kai Tan, Jiang Qian. EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types
3552 -- 3558Alexander V. Alekseyenko. t-test on distances
3559 -- 3565Ruoyan Chen, Yu-Lung Lau, Yan Zhang, Wanling Yang. SRinversion: a tool for detecting short inversions by splitting and re-aligning poorly mapped and unmapped sequencing reads
3566 -- 3574Nicole E. Wheeler, Lars Barquist, Robert A. Kingsley, Paul P. Gardner. A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes
3575 -- 3583Krishna Choudhary, Nathan P. Shih, Fei Deng, Mirko Ledda, Bo Li, Sharon Aviran. Metrics for rapid quality control in RNA structure probing experiments
3584 -- 3592Jing Lu, Heather A. Carlson. ChemTreeMap: an interactive map of biochemical similarity in molecular datasets
3593 -- 3602Ei-Wen Yang, Tao Jiang 0001. SDEAP: a splice graph based differential transcript expression analysis tool for population data
3603 -- 3610Xiang Zhan, Santhosh Girirajan, Ni Zhao, Michael C. Wu, Debashis Ghosh. A novel copy number variants kernel association test with application to autism spectrum disorders studies
3611 -- 3618S. Cogill, L. Wang. Support vector machine model of developmental brain gene expression data for prioritization of Autism risk gene candidates
3619 -- 3626Dong Xu, Meizhuo Zhang, Yanping Xie, Fan Wang, Ming Chen, Kenny Q. Zhu, Jia Wei. DTMiner: identification of potential disease targets through biomedical literature mining
3627 -- 3634Gianluca Corrado, Toma Tebaldi, Fabrizio Costa, Paolo Frasconi, Andrea Passerini. RNAcommender: genome-wide recommendation of RNA-protein interactions
3635 -- 3644Serguei V. S. Pakhomov, Greg Finley, Reed McEwan, Yan Wang, Genevieve B. Melton. Corpus domain effects on distributional semantic modeling of medical terms
3645 -- 3653Vedrana Vidulin, Tomislav Smuc, Fran Supek. Extensive complementarity between gene function prediction methods
3654 -- 3660Shicai Wang, Mihaela A. Mares, Yike Guo. CGDM: collaborative genomic data model for molecular profiling data using NoSQL
3661 -- 3663Louis-Philippe Lemieux Perreault, Marc-André Legault, Géraldine Asselin, Marie-Pierre Dube. genipe: an automated genome-wide imputation pipeline with automatic reporting and statistical tools
3664 -- 3666Rickard Hammarén, Chandan Pal, Johan Bengtsson-Palme. FARAO: the flexible all-round annotation organizer
3667 -- 3669Zongli Xu, Jack A. Taylor, Yuet-Kin Leung, Shuk-Mei Ho, Liang Niu. oxBS-MLE: an efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine in paired bisulfite and oxidative bisulfite treated DNA
3670 -- 3672Jamie Waese, Asher Pasha, Tingting Wang, Anna van Weringh, David S. Guttman, Nicholas J. Provart. Gene Slider: sequence logo interactive data-visualization for education and research
3673 -- 3675Erwin Holzhauser, Ping Ge, Shaojie Zhang. WebSTAR3D: a web server for RNA 3D structural alignment
3676 -- 3678Li C. Xue, João P. G. L. M. Rodrigues, Panagiotis L. Kastritis, Alexandre M. J. J. Bonvin, Anna Vangone. PRODIGY: a web server for predicting the binding affinity of protein-protein complexes
3679 -- 3681Jasmine Dumas, Michael A. Gargano, Garrett M. Dancik. shinyGEO: a web-based application for analyzing gene expression omnibus datasets
3682 -- 3684Thomas Eder, Florian Grebien, Thomas Rattei. NVT: a fast and simple tool for the assessment of RNA-seq normalization strategies
3685 -- 3687Zhou Lan, Yize Zhao, Jian Kang, Tianwei Yu. Bayesian network feature finder (BANFF): an R package for gene network feature selection
3688 -- 3690Stephen G. Gaffney, Jeffrey P. Townsend. PathScore: a web tool for identifying altered pathways in cancer data
3691 -- 3693Jan R. Detrez, Jean-Marie Vanderwinden, Michaël Barbier, Marlies Verschuuren, Rony Nuydens, Xavier Langlois, Jean-Pierre Timmermans, Winnok De Vos. BiDiFuse: a FIJI plugin for fusing bi-directionally recorded microscopic image volumes
3694 -- 0X. Hu, Q. Dong, J. Yang, Y. Zhang. ab initio modeling with template-based transferals